Information for 12-ATAAAATGTA (Motif 17)

G T C A G C A T C T G A G T C A C G T A T G C A C G A T C T A G G A C T C G T A
Reverse Opposite:
A C G T C T G A A G T C C G T A A C G T A C G T A C G T A G C T C G T A A C G T
p-value:1e-9
log p-value:-2.159e+01
Information Content per bp:1.834
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.75%
Number of Background Sequences with motif192.2
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets125.5 +/- 52.8bp
Average Position of motif in Background96.4 +/- 64.1bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0075.1_Hoxd10/Jaspar

Match Rank:1
Score:0.73
Offset:-6
Orientation:forward strand
Alignment:------ATAAAATGTA-
AATGCAATAAAATTTAT
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A G C A T C T G A G T C A C G T A T G C A C G A T C T A G G A C T C G T A A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

PH0046.1_Hoxa10/Jaspar

Match Rank:2
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------ATAAAATGTA
TAGGTAATAAAATTCA
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A G C A T C T G A G T C A C G T A T G C A C G A T C T A G G A C T C G T A
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---ATAAAATGTA
GTCATAAAAN---
 A C G T A C G T A C G T G T C A G C A T C T G A G T C A C G T A T G C A C G A T C T A G G A C T C G T A
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---ATAAAATGTA
CCAATAAAAA---
 A C G T A C G T A C G T G T C A G C A T C T G A G T C A C G T A T G C A C G A T C T A G G A C T C G T A
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T

PH0084.1_Irx3_2/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---ATAAAATGTA----
NNTATTACATGTANNNT
 A C G T A C G T A C G T G T C A G C A T C T G A G T C A C G T A T G C A C G A T C T A G G A C T C G T A A C G T A C G T A C G T A C G T
G C A T C T G A G C A T G C T A A C G T C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A C G A T G C T A G C A T G C A T

PB0146.1_Mafk_2/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ATAAAATGTA---
GAAAAAATTGCAAGG
 A C G T A C G T G T C A G C A T C T G A G T C A C G T A T G C A C G A T C T A G G A C T C G T A A C G T A C G T A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

PH0078.1_Hoxd13/Jaspar

Match Rank:7
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------ATAAAATGTA
CTACCAATAAAATTCT
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A G C A T C T G A G T C A C G T A T G C A C G A T C T A G G A C T C G T A
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

CDX2/MA0465.1/Jaspar

Match Rank:8
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----ATAAAATGTA
AAGCCATAAAA----
 A C G T A C G T A C G T A C G T A C G T G T C A G C A T C T G A G T C A C G T A T G C A C G A T C T A G G A C T C G T A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:9
Score:0.65
Offset:-7
Orientation:forward strand
Alignment:-------ATAAAATGTA
AAAGGTAATAAAATTT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A G C A T C T G A G T C A C G T A T G C A C G A T C T A G G A C T C G T A
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T A C G T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ATAAAATGTA
NCYAATAAAA----
 A C G T A C G T A C G T A C G T G T C A G C A T C T G A G T C A C G T A T G C A C G A T C T A G G A C T C G T A
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T