Information for 2-CTGTTGGC (Motif 3)

A G T C G C A T A C T G A G C T A C G T A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C C G T A T C G A T G A C C G T A A C T G
p-value:1e-22
log p-value:-5.188e+01
Information Content per bp:1.828
Number of Target Sequences with motif235.0
Percentage of Target Sequences with motif35.93%
Number of Background Sequences with motif9205.4
Percentage of Background Sequences with motif19.35%
Average Position of motif in Targets100.2 +/- 52.3bp
Average Position of motif in Background101.9 +/- 65.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:CTGTTGGC---
--NTTGGCANN
 A G T C G C A T A C T G A G C T A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:CTGTTGGC---
-NNTTGGCANN
 A G T C G C A T A C T G A G C T A C G T A C T G A C T G A G T C A C G T A C G T A C G T
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:CTGTTGGC--
-GGTTGGCAT
 A G T C G C A T A C T G A G C T A C G T A C T G A C T G A G T C A C G T A C G T
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:CTGTTGGC--
--CTTGGCAA
 A G T C G C A T A C T G A G C T A C G T A C T G A C T G A G T C A C G T A C G T
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CTGTTGGC
AACAGATGGC
 A C G T A C G T A G T C G C A T A C T G A G C T A C G T A C T G A C T G A G T C
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:6
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CTGTTGGC-
-VGCTGGCA
 A G T C G C A T A C T G A G C T A C G T A C T G A C T G A G T C A C G T
A C G T T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A

NFIC/MA0161.2/Jaspar

Match Rank:7
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTGTTGGC---
TACTTGGCAGA
 A G T C G C A T A C T G A G C T A C G T A C T G A C T G A G T C A C G T A C G T A C G T
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A

NEUROD1/MA1109.1/Jaspar

Match Rank:8
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CTGTTGGC--
GGACAGATGGCAG
 A C G T A C G T A C G T A G T C G C A T A C T G A G C T A C G T A C T G A C T G A G T C A C G T A C G T
C A T G T C A G T C G A T G A C C G T A A C T G T G C A G C A T C A T G A C T G A G T C T C G A T A C G

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:9
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CTGTTGGC
VNAVCAGCTGGC
 A C G T A C G T A C G T A C G T A G T C G C A T A C T G A G C T A C G T A C T G A C T G A G T C
T C A G A C G T T C G A T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G T C

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:10
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTGTTGGC-
VCAGCTGBNN
 A C G T A G T C G C A T A C T G A G C T A C G T A C T G A C T G A G T C A C G T
T G A C A T G C C G T A A T C G A T G C C A G T C A T G A C T G A G T C G T A C