Information for 6-CACATATTTC (Motif 6)

G T A C C G T A T G A C C G T A G C A T C T G A C G A T G C A T G A C T G T A C
Reverse Opposite:
C A T G C T G A C G T A G C T A G A C T C G T A G C A T A C T G G C A T C A T G
p-value:1e-13
log p-value:-3.064e+01
Information Content per bp:1.655
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif6.57%
Number of Background Sequences with motif783.2
Percentage of Background Sequences with motif1.65%
Average Position of motif in Targets118.3 +/- 55.1bp
Average Position of motif in Background103.0 +/- 60.1bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NEUROG2/MA0669.1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CACATATTTC
AACATATGTC
 G T A C C G T A T G A C C G T A G C A T C T G A C G A T G C A T G A C T G T A C
T C G A T G C A G A T C C T G A A C G T T G C A G C A T A C T G A G C T A G T C

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CACATATTTC
GKVTCADRTTWC
 A C G T A C G T G T A C C G T A T G A C C G T A G C A T C T G A C G A T G C A T G A C T G T A C
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C

Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer

Match Rank:3
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CACATATTTC-
VGGTVTCAGRTTWCA
 A C G T A C G T A C G T A C G T G T A C C G T A T G A C C G T A G C A T C T G A C G A T G C A T G A C T G T A C A C G T
T A G C T C A G T C A G C A G T T C A G A C G T A G T C T C G A C T A G C T A G A C G T A C G T C G A T G T A C G T C A

Arid5a/MA0602.1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CACATATTTC----
CTAATATTGCTAAA
 G T A C C G T A T G A C C G T A G C A T C T G A C G A T G C A T G A C T G T A C A C G T A C G T A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CACATATTTC----
CTAATATTGCTAAA
 G T A C C G T A T G A C C G T A G C A T C T G A C G A T G C A T G A C T G T A C A C G T A C G T A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CACATATTTC
GKMTCADRTTWC
 A C G T A C G T G T A C C G T A T G A C C G T A G C A T C T G A C G A T G C A T G A C T G T A C
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C

Twist2/MA0633.1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CACATATTTC
NACATATGGN
 G T A C C G T A T G A C C G T A G C A T C T G A C G A T G C A T G A C T G T A C
G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T

Atoh1/MA0461.2/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CACATATTTC
AACATATGTT
 G T A C C G T A T G A C C G T A G C A T C T G A C G A T G C A T G A C T G T A C
T C G A T G C A T G A C T C G A C A G T G T C A C G A T C A T G A C G T G A C T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CACATATTTC-----
-----ATTTCCTGTN
 G T A C C G T A T G A C C G T A G C A T C T G A C G A T G C A T G A C T G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A A G C T A C G T A C G T A G T C A G T C A C G T A T C G G A C T A T C G

NFATC3/MA0625.1/Jaspar

Match Rank:10
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CACATATTTC----
----ATTTTCCATT
 G T A C C G T A T G A C C G T A G C A T C T G A C G A T G C A T G A C T G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G A C T C G A T G C A T A G C T G T A C A T G C C T G A G A C T G C A T