Information for 10-GGAATTTCCC (Motif 11)

C T A G T C A G T C G A G T C A G A C T A C G T A C G T G A T C G T A C G T A C
Reverse Opposite:
C A T G C A T G C T A G T G C A T G C A C T G A C A G T A G C T A G T C G A T C
p-value:1e-14
log p-value:-3.302e+01
Information Content per bp:1.649
Number of Target Sequences with motif192.0
Percentage of Target Sequences with motif10.79%
Number of Background Sequences with motif2835.2
Percentage of Background Sequences with motif5.96%
Average Position of motif in Targets104.3 +/- 54.9bp
Average Position of motif in Background100.4 +/- 61.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.89
Offset:0
Orientation:forward strand
Alignment:GGAATTTCCC
GGAAATTCCC
 C T A G T C A G T C G A G T C A G A C T A C G T A C G T G A T C G T A C G T A C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-GGAATTTCCC
GGGAATTTCC-
 A C G T C T A G T C A G T C G A G T C A G A C T A C G T A C G T G A T C G T A C G T A C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:3
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--GGAATTTCCC
NGGGGATTTCCC
 A C G T A C G T C T A G T C A G T C G A G T C A G A C T A C G T A C G T G A T C G T A C G T A C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

REL/MA0101.1/Jaspar

Match Rank:4
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-GGAATTTCCC
GGGGATTTCC-
 A C G T C T A G T C A G T C G A G T C A G A C T A C G T A C G T G A T C G T A C G T A C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T

MF0003.1_REL_class/Jaspar

Match Rank:5
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GGAATTTCCC
GGAAATCCCC
 C T A G T C A G T C G A G T C A G A C T A C G T A C G T G A T C G T A C G T A C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

RELB/MA1117.1/Jaspar

Match Rank:6
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GGAATTTCCC--
-GAATTCCCCGG
 C T A G T C A G T C G A G T C A G A C T A C G T A C G T G A T C G T A C G T A C A C G T A C G T
A C G T C T A G C T G A C G T A C G A T G A C T G A T C G T A C G T A C T A G C C A T G T A C G

NFKB2/MA0778.1/Jaspar

Match Rank:7
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GGAATTTCCC-
AGGGGATTCCCCT
 A C G T A C G T C T A G T C A G T C G A G T C A G A C T A C G T A C G T G A T C G T A C G T A C A C G T
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:8
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GGAATTTCCC-
GGGGATTCCCCC
 A C G T C T A G T C A G T C G A G T C A G A C T A C G T A C G T G A T C G T A C G T A C A C G T
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GGAATTTCCC
NCTGGAATGC---
 A C G T A C G T A C G T C T A G T C A G T C G A G T C A G A C T A C G T A C G T G A T C G T A C G T A C
G A T C G T A C C G A T A C T G A C T G C G T A C G T A A C G T A C T G G A T C A C G T A C G T A C G T

RBPJ/MA1116.1/Jaspar

Match Rank:10
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GGAATTTCCC---
---NNTTCCCANN
 C T A G T C A G T C G A G T C A G A C T A C G T A C G T G A T C G T A C G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A C G T C A G T G C A T T G A C T G A C A G T C C T G A A T C G T C A G