Information for 19-GCATTTACGC (Motif 20)

C T A G G A T C G C T A G C A T A C G T A C G T G T C A G A T C T A C G G T A C
Reverse Opposite:
C A T G A T G C C T A G C A G T T G C A T G C A C G T A C G A T C T A G G A T C
p-value:1e-9
log p-value:-2.190e+01
Information Content per bp:1.657
Number of Target Sequences with motif69.0
Percentage of Target Sequences with motif3.88%
Number of Background Sequences with motif792.1
Percentage of Background Sequences with motif1.66%
Average Position of motif in Targets99.1 +/- 58.1bp
Average Position of motif in Background101.3 +/- 62.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Barhl1/MA0877.1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCATTTACGC
NNCAATTANN-
 A C G T C T A G G A T C G C T A G C A T A C G T A C G T G T C A G A T C T A C G G T A C
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T

BARHL2/MA0635.1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCATTTACGC
ANCGTTTANN-
 A C G T C T A G G A T C G C T A G C A T A C G T A C G T G T C A G A T C T A C G G T A C
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C A C G T

PH0077.1_Hoxd12/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GCATTTACGC-----
NNNATTTTACGACNNTN
 A C G T A C G T C T A G G A T C G C T A G C A T A C G T A C G T G T C A G A T C T A C G G T A C A C G T A C G T A C G T A C G T A C G T
G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G

HOXC11/MA0651.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCATTTACGC--
-NTTTTACGACC
 C T A G G A T C G C T A G C A T A C G T A C G T G T C A G A T C T A C G G T A C A C G T A C G T
A C G T C G T A C G A T C A G T C G A T G C A T C G T A A G T C C T A G C T G A A G T C G A T C

PH0067.1_Hoxc12/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCATTTACGC-----
GNNNTTTTACGACCTNA
 A C G T A C G T C T A G G A T C G C T A G C A T A C G T A C G T G T C A G A T C T A C G G T A C A C G T A C G T A C G T A C G T A C G T
C T A G G C T A T C G A C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C A G C T C G T A C T G A

Pax6/MA0069.1/Jaspar

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GCATTTACGC-------
---TTCACGCATGAGTT
 C T A G G A T C G C T A G C A T A C G T A C G T G T C A G A T C T A C G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

PH0065.1_Hoxc10/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCATTTACGC-----
ANNTTTTACGACNTNN
 A C G T C T A G G A T C G C T A G C A T A C G T A C G T G T C A G A T C T A C G G T A C A C G T A C G T A C G T A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

PH0076.1_Hoxd11/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCATTTACGC-----
ANNATTTTACGACNTNA
 A C G T A C G T C T A G G A T C G C T A G C A T A C G T A C G T G T C A G A T C T A C G G T A C A C G T A C G T A C G T A C G T A C G T
G T C A C T A G C T A G C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T G A

ISL2/MA0914.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCATTTACGC
GCACTTAA--
 C T A G G A T C G C T A G C A T A C G T A C G T G T C A G A T C T A C G G T A C
T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T

HOXD12/MA0873.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCATTTACGC--
-NTTTTACGACT
 C T A G G A T C G C T A G C A T A C G T A C G T G T C A G A T C T A C G G T A C A C G T A C G T
A C G T C A G T C G A T G C A T A G C T G C A T C T G A A G T C A T C G T C G A A G T C A G C T