Information for 23-CGGTSMTTKACK (Motif 25)

A G T C A C T G A C T G A C G T T A C G G T A C A C G T A C G T A C G T C T G A A G T C A C T G
Reverse Opposite:
G T A C A C T G A G C T T G C A C G T A C G T A A C T G A T G C G T C A A G T C A G T C A C T G
p-value:1e-6
log p-value:-1.495e+01
Information Content per bp:1.838
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif56.7
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets89.9 +/- 39.9bp
Average Position of motif in Background96.9 +/- 68.5bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR1H4/MA1110.1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CGGTSMTTKACK
NAGGTCATTGA--
 A C G T A G T C A C T G A C T G A C G T T A C G G T A C A C G T A C G T A C G T C T G A A G T C A C T G
C G A T T C G A C A T G C A T G A C G T G A T C T C G A A G C T G C A T T C A G T G C A A C G T A C G T

NR4A2::RXRA/MA1147.1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CGGTSMTTKACK--
GAGGTCATTGACCCC
 A C G T A G T C A C T G A C T G A C G T T A C G G T A C A C G T A C G T A C G T C T G A A G T C A C T G A C G T A C G T
T C A G T C G A C A T G C A T G A G C T A G T C T C G A C G A T A G C T T A C G T G C A G T A C G T A C A G T C A G T C

Gfi1/MA0038.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CGGTSMTTKACK
CNGTGATTTN--
 A G T C A C T G A C T G A C G T T A C G G T A C A C G T A C G T A C G T C T G A A G T C A C T G
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T A C G T

NR1A4::RXRA/MA1146.1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CGGTSMTTKACK--
GAGGTCATTGACCTT
 A C G T A G T C A C T G A C T G A C G T T A C G G T A C A C G T A C G T A C G T C T G A A G T C A C T G A C G T A C G T
T C A G T C G A C T A G C A T G A C G T A G T C C T G A G C A T A G C T T C A G T G C A G T A C G T A C A G C T A G C T

Gfi1b/MA0483.1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CGGTSMTTKACK
TGCTGTGATTT---
 A C G T A C G T A G T C A C T G A C T G A C G T T A C G G T A C A C G T A C G T A C G T C T G A A G T C A C T G
C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T A C G T A C G T A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CGGTSMTTKACK
GCAGTGATTT---
 A C G T A G T C A C T G A C T G A C G T T A C G G T A C A C G T A C G T A C G T C T G A A G T C A C T G
C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CGGTSMTTKACK--
--RTGATTKATRGN
 A G T C A C T G A C T G A C G T T A C G G T A C A C G T A C G T A C G T C T G A A G T C A C T G A C G T A C G T
A C G T A C G T C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C

PH0073.1_Hoxc9/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CGGTSMTTKACK--
GGAGGTCATTAATTAT
 A C G T A C G T A G T C A C T G A C T G A C G T T A C G G T A C A C G T A C G T A C G T C T G A A G T C A C T G A C G T A C G T
T C A G C A T G T C G A C T A G T C A G G A C T G T A C C T G A G C A T G C A T C G T A G C T A G A C T G A C T C G T A A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CGGTSMTTKACK---
--NTGATTTATGGCC
 A G T C A C T G A C T G A C G T T A C G G T A C A C G T A C G T A C G T C T G A A G T C A C T G A C G T A C G T A C G T
A C G T A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CGGTSMTTKACK-
NAGGTCANTGACCT
 A C G T A G T C A C T G A C T G A C G T T A C G G T A C A C G T A C G T A C G T C T G A A G T C A C T G A C G T
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T