Information for 9-GATGATTTAT (Motif 10)

A C T G C T G A C G A T A T C G T G C A A C G T A C G T C G A T C T G A A C G T
Reverse Opposite:
G T C A A G C T C G T A C G T A G T C A A C G T A T G C C G T A A G C T T G A C
p-value:1e-14
log p-value:-3.400e+01
Information Content per bp:1.736
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif1.78%
Number of Background Sequences with motif193.7
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets90.7 +/- 55.8bp
Average Position of motif in Background92.7 +/- 56.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:1
Score:0.81
Offset:1
Orientation:forward strand
Alignment:GATGATTTAT---
-RTGATTKATRGN
 A C T G C T G A C G A T A T C G T G C A A C G T A C G T C G A T C T G A A C G T A C G T A C G T A C G T
A C G T C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.80
Offset:2
Orientation:reverse strand
Alignment:GATGATTTAT---
--TGATTTATGGC
 A C T G C T G A C G A T A T C G T G C A A C G T A C G T C G A T C T G A A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

Hoxc9/MA0485.1/Jaspar

Match Rank:3
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:GATGATTTAT----
-NTGATTTATGGCC
 A C T G C T G A C G A T A T C G T G C A A C G T A C G T C G A T C T G A A C G T A C G T A C G T A C G T A C G T
A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:GATGATTTAT----
--TGATTTATGGCC
 A C T G C T G A C G A T A T C G T G C A A C G T A C G T C G A T C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:GATGATTTAT--
--TGATTGATGA
 A C T G C T G A C G A T A T C G T G C A A C G T A C G T C G A T C T G A A C G T A C G T A C G T
A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:6
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GATGATTTAT---
-ATGATKGATGRC
 A C T G C T G A C G A T A T C G T G C A A C G T A C G T C G A T C T G A A C G T A C G T A C G T A C G T
A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:7
Score:0.71
Offset:2
Orientation:forward strand
Alignment:GATGATTTAT----
--TGATTRATGGCY
 A C T G C T G A C G A T A T C G T G C A A C G T A C G T C G A T C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:8
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:GATGATTTAT----
--DGWTTTATGRCN
 A C T G C T G A C G A T A T C G T G C A A C G T A C G T C G A T C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

Gfi1/MA0038.1/Jaspar

Match Rank:9
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GATGATTTAT
CNGTGATTTN-
 A C G T A C T G C T G A C G A T A T C G T G C A A C G T A C G T C G A T C T G A A C G T
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T

PBX1/MA0070.1/Jaspar

Match Rank:10
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GATGATTTAT--
TTTGATTGATGN
 A C T G C T G A C G A T A T C G T G C A A C G T A C G T C G A T C T G A A C G T A C G T A C G T
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G