Information for 13-AGGGGGRTTA (Motif 16)

G T C A C T A G C T A G A C T G A C T G C T A G T C G A A C G T A C G T C G T A
Reverse Opposite:
A C G T T G C A C G T A A G C T A G T C A G T C A G T C A G T C G A T C A C G T
p-value:1e-9
log p-value:-2.281e+01
Information Content per bp:1.836
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif123.9
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets99.1 +/- 56.5bp
Average Position of motif in Background98.9 +/- 55.9bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.60
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0122.1_Obox2/Jaspar

Match Rank:1
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--AGGGGGRTTA-----
TGAGGGGGATTAACTAT
 A C G T A C G T G T C A C T A G C T A G A C T G A C T G C T A G T C G A A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C G A T A C T G T C G A C T A G C T A G C T A G C T A G C A T G G T C A C A G T G C A T C G T A C G T A G T A C C G A T G T C A G A C T

PH0121.1_Obox1/Jaspar

Match Rank:2
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--AGGGGGRTTA-----
TTAAGGGGATTAACTAC
 A C G T A C G T G T C A C T A G C T A G A C T G A C T G C T A G T C G A A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C

PH0139.1_Pitx3/Jaspar

Match Rank:3
Score:0.83
Offset:0
Orientation:forward strand
Alignment:AGGGGGRTTA------
AGGGGGATTAGCTGCC
 G T C A C T A G C T A G A C T G A C T G C T A G T C G A A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

PH0123.1_Obox3/Jaspar

Match Rank:4
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--AGGGGGRTTA-----
TGAGGGGGATTAACTAT
 A C G T A C G T G T C A C T A G C T A G A C T G A C T G C T A G T C G A A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T

PH0137.1_Pitx1/Jaspar

Match Rank:5
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--AGGGGGRTTA-----
TTAGAGGGATTAACAAT
 A C G T A C G T G T C A C T A G C T A G A C T G A C T G C T A G T C G A A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

Crx/MA0467.1/Jaspar

Match Rank:6
Score:0.78
Offset:0
Orientation:forward strand
Alignment:AGGGGGRTTA-
AAGAGGATTAG
 G T C A C T A G C T A G A C T G A C T G C T A G T C G A A C G T A C G T C G T A A C G T
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

PH0015.1_Crx/Jaspar

Match Rank:7
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--AGGGGGRTTA----
CGTTGGGGATTAGCCT
 A C G T A C G T G T C A C T A G C T A G A C T G A C T G C T A G T C G A A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

PITX3/MA0714.1/Jaspar

Match Rank:8
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:AGGGGGRTTA--
---GGGATTANN
 G T C A C T A G C T A G A C T G A C T G C T A G T C G A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:AGGGGGRTTA
--NGGGATTA
 G T C A C T A G C T A G A C T G A C T G C T A G T C G A A C G T A C G T C G T A
A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A

Pitx1/MA0682.1/Jaspar

Match Rank:10
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:AGGGGGRTTA-
---GGGATTAA
 G T C A C T A G C T A G A C T G A C T G C T A G T C G A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A