Information for 9-GACAGGACAGAC (Motif 19)

A C T G C G T A A G T C C G T A A C T G A T C G C T G A A T G C G T C A A C T G G T C A A G T C
Reverse Opposite:
A C T G A C G T A G T C A C G T A T C G A G C T A T G C A G T C A C G T A C T G A C G T A G T C
p-value:1e-7
log p-value:-1.765e+01
Information Content per bp:1.938
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif20.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets98.4 +/- 52.9bp
Average Position of motif in Background94.0 +/- 56.6bp
Strand Bias (log2 ratio + to - strand density)-1.7
Multiplicity (# of sites on avg that occur together)2.73
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS2/MA0774.1/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GACAGGACAGAC
TTGACAGC------
 A C G T A C G T A C T G C G T A A G T C C G T A A C T G A T C G C T G A A T G C G T C A A C T G G T C A A G T C
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GACAGGACAGAC
TTGACAGG------
 A C G T A C G T A C T G C G T A A G T C C G T A A C T G A T C G C T G A A T G C G T C A A C T G G T C A A G T C
C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:GACAGGACAGAC----
------CCAGACRSVB
 A C T G C G T A A G T C C G T A A C T G A T C G C T G A A T G C G T C A A C T G G T C A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GACAGGACAGAC
CACAGN------
 A C T G C G T A A G T C C G T A A C T G A T C G C T G A A T G C G T C A A C T G G T C A A G T C
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:GACAGGACAGAC--
------CCAGACAG
 A C T G C G T A A G T C C G T A A C T G A T C G C T G A A T G C G T C A A C T G G T C A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GACAGGACAGAC
TTGACAG-------
 A C G T A C G T A C T G C G T A A G T C C G T A A C T G A T C G C T G A A T G C G T C A A C T G G T C A A G T C
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GACAGGACAGAC
-TRAGGTCA---
 A C T G C G T A A G T C C G T A A C T G A T C G C T G A A T G C G T C A A C T G G T C A A G T C
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GACAGGACAGAC--
------BCAGACWA
 A C T G C G T A A G T C C G T A A C T G A T C G C T G A A T G C G T C A A C T G G T C A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

PH0169.1_Tgif1/Jaspar

Match Rank:9
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------GACAGGACAGAC
GATATTGACAGCTGCGT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C C G T A A C T G A T C G C T G A A T G C G T C A A C T G G T C A A G T C
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T A C G T

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GACAGGACAGAC
NACAGGAAAT--
 A C T G C G T A A G T C C G T A A C T G A T C G C T G A A T G C G T C A A C T G G T C A A G T C
T G C A C T G A A G T C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T