Information for 3-SYTGCCAAGR (Motif 3)

A T G C A G T C C G A T A C T G A T G C A G T C C G T A C T G A T C A G C T G A
Reverse Opposite:
G A C T A G T C A G C T A C G T A C T G A T C G G T A C C G T A T C A G T A C G
p-value:1e-45
log p-value:-1.047e+02
Information Content per bp:1.638
Number of Target Sequences with motif892.0
Percentage of Target Sequences with motif35.35%
Number of Background Sequences with motif10650.1
Percentage of Background Sequences with motif22.83%
Average Position of motif in Targets98.9 +/- 52.8bp
Average Position of motif in Background99.0 +/- 63.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.95
Offset:1
Orientation:forward strand
Alignment:SYTGCCAAGR
-TTGCCAAG-
 A T G C A G T C C G A T A C T G A T G C A G T C C G T A C T G A T C A G C T G A
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.93
Offset:0
Orientation:forward strand
Alignment:SYTGCCAAGR
CGTGCCAAG-
 A T G C A G T C C G A T A C T G A T G C A G T C C G T A C T G A T C A G C T G A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.92
Offset:0
Orientation:forward strand
Alignment:SYTGCCAAGR
GGTGCCAAGT
 A T G C A G T C C G A T A C T G A T G C A G T C C G T A C T G A T C A G C T G A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIC/MA0161.2/Jaspar

Match Rank:4
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:SYTGCCAAGR-
NNTGCCAAGNN
 A T G C A G T C C G A T A C T G A T G C A G T C C G T A C T G A T C A G C T G A A C G T
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:5
Score:0.80
Offset:2
Orientation:forward strand
Alignment:SYTGCCAAGR
--TGCCAGCB
 A T G C A G T C C G A T A C T G A T G C A G T C C G T A C T G A T C A G C T G A
A C G T A C G T G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.79
Offset:1
Orientation:forward strand
Alignment:SYTGCCAAGR
-ATGCCAACC
 A T G C A G T C C G A T A C T G A T G C A G T C C G T A C T G A T C A G C T G A
A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:SYTGCCAAGR
RHTGWCAR--
 A T G C A G T C C G A T A C T G A T G C A G T C C G T A C T G A T C A G C T G A
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.73
Offset:2
Orientation:forward strand
Alignment:SYTGCCAAGR
--TGTCANYT
 A T G C A G T C C G A T A C T G A T G C A G T C C G T A C T G A T C A G C T G A
A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--SYTGCCAAGR----
ACTATGCCAACCTACC
 A C G T A C G T A T G C A G T C C G A T A C T G A T G C A G T C C G T A C T G A T C A G C T G A A C G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:SYTGCCAAGR
GCTGTCAA--
 A T G C A G T C C G A T A C T G A T G C A G T C C G T A C T G A T C A G C T G A
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T