Information for 4-GGCWGCCAGCCA (Motif 4)

C A T G T A C G G T A C G C A T A C T G A T G C G T A C G C T A A C T G G T A C G T A C G C T A
Reverse Opposite:
C G A T C A T G C A T G T G A C C G A T C A T G T A C G T G A C C G T A C A T G A T G C G T A C
p-value:1e-21
log p-value:-5.027e+01
Information Content per bp:1.669
Number of Target Sequences with motif214.0
Percentage of Target Sequences with motif8.48%
Number of Background Sequences with motif1917.2
Percentage of Background Sequences with motif4.11%
Average Position of motif in Targets102.1 +/- 54.1bp
Average Position of motif in Background97.7 +/- 65.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-GGCWGCCAGCCA-
TGGCAGNCTGCCAG
 A C G T C A T G T A C G G T A C G C A T A C T G A T G C G T A C G C T A A C T G G T A C G T A C G C T A A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---GGCWGCCAGCCA-
CTTGGCANNNTGCCAA
 A C G T A C G T A C G T C A T G T A C G G T A C G C A T A C T G A T G C G T A C G C T A A C T G G T A C G T A C G C T A A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GGCWGCCAGCCA-
TGGCACCATGCCAA
 A C G T C A T G T A C G G T A C G C A T A C T G A T G C G T A C G C T A A C T G G T A C G T A C G C T A A C G T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GGCWGCCAGCCA
GSCTGTCACTCA
 C A T G T A C G G T A C G C A T A C T G A T G C G T A C G C T A A C T G G T A C G T A C G C T A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:5
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GGCWGCCAGCCA
---TGCCAGCB-
 C A T G T A C G G T A C G C A T A C T G A T G C G T A C G C T A A C T G G T A C G T A C G C T A
A C G T A C G T A C G T G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:GGCWGCCAGCCA-
-----BCAGACWA
 C A T G T A C G G T A C G C A T A C T G A T G C G T A C G C T A A C T G G T A C G T A C G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGCWGCCAGCCA-
AGGTGNCAGACAG
 C A T G T A C G G T A C G C A T A C T G A T G C G T A C G C T A A C T G G T A C G T A C G C T A A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.60
Offset:5
Orientation:forward strand
Alignment:GGCWGCCAGCCA--
-----CGTGCCAAG
 C A T G T A C G G T A C G C A T A C T G A T G C G T A C G C T A A C T G G T A C G T A C G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGCWGCCAGCCA
AGGTGHCAGACA
 C A T G T A C G G T A C G C A T A C T G A T G C G T A C G C T A A C T G G T A C G T A C G C T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GGCWGCCAGCCA----
-SCAGYCADGCATGAC
 C A T G T A C G G T A C G C A T A C T G A T G C G T A C G C T A A C T G G T A C G T A C G C T A A C G T A C G T A C G T A C G T
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C