Information for 12-GAGCGCTCTA (Motif 17)

C T A G T C G A C T A G A G T C T C A G A G T C A C G T A G T C G C A T C G T A
Reverse Opposite:
G C A T C G T A A C T G C G T A C T A G A G T C C T A G A G T C A G C T A G T C
p-value:1e-6
log p-value:-1.479e+01
Information Content per bp:1.774
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.49%
Number of Background Sequences with motif233.7
Percentage of Background Sequences with motif0.48%
Average Position of motif in Targets111.5 +/- 58.1bp
Average Position of motif in Background103.0 +/- 59.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GAGCGCTCTA
AASCACTCAA
 C T A G T C G A C T A G A G T C T C A G A G T C A C G T A G T C G C A T C G T A
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

PB0099.1_Zfp691_1/Jaspar

Match Rank:2
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----GAGCGCTCTA--
NNNNTGAGCACTGTNNG
 A C G T A C G T A C G T A C G T A C G T C T A G T C G A C T A G A G T C T C A G A G T C A C G T A G T C G C A T C G T A A C G T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GAGCGCTCTA-
AGCCACTCAAG
 C T A G T C G A C T A G A G T C T C A G A G T C A C G T A G T C G C A T C G T A A C G T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

PB0009.1_E2F3_1/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GAGCGCTCTA--
ANCGCGCGCCCTTNN
 A C G T A C G T A C G T C T A G T C G A C T A G A G T C T C A G A G T C A C G T A G T C G C A T C G T A A C G T A C G T
C G T A C G A T T A G C C T A G T A G C A T C G A T G C A C T G A G T C A T G C G A T C C G A T G C A T C G T A A G C T

PB0008.1_E2F2_1/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GAGCGCTCTA--
NTCGCGCGCCTTNNN
 A C G T A C G T A C G T C T A G T C G A C T A G A G T C T C A G A G T C A C G T A G T C G C A T C G T A A C G T A C G T
C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAGCGCTCTA-
-NSCACTYVAV
 C T A G T C G A C T A G A G T C T C A G A G T C A C G T A G T C G C A T C G T A A C G T
A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GAGCGCTCTA-
-RSCACTYRAG
 C T A G T C G A C T A G A G T C T C A G A G T C A C G T A G T C G C A T C G T A A C G T
A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

PB0095.1_Zfp161_1/Jaspar

Match Rank:8
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------GAGCGCTCTA
NCANGCGCGCGCGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C G A C T A G A G T C T C A G A G T C A C G T A G T C G C A T C G T A
G C A T G A T C C T G A C T A G C T A G G A T C T C A G G A T C C T A G A G T C C T A G A G T C T A C G G A T C G A T C G T C A

PB0194.1_Zbtb12_2/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GAGCGCTCTA------
-AGNGTTCTAATGANN
 C T A G T C G A C T A G A G T C T C A G A G T C A C G T A G T C G C A T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C T A T C A G T A G C C A T G C A G T C A G T G T A C A G C T G C T A G C T A A G C T T A C G C T G A A C G T C G T A

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GAGCGCTCTA
---NGCTN--
 C T A G T C G A C T A G A G T C T C A G A G T C A C G T A G T C G C A T C G T A
A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T