Information for 2-CTTGGCANGS (Motif 2)

G A T C G A C T G C A T C T A G T A C G G T A C T G C A G T C A C T A G T A G C
Reverse Opposite:
A T C G G A T C C A G T A C G T A C T G A T G C A G T C C G T A C T G A C T A G
p-value:1e-21
log p-value:-4.881e+01
Information Content per bp:1.625
Number of Target Sequences with motif117.0
Percentage of Target Sequences with motif19.44%
Number of Background Sequences with motif3567.5
Percentage of Background Sequences with motif7.35%
Average Position of motif in Targets98.6 +/- 56.9bp
Average Position of motif in Background98.2 +/- 63.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.2/Jaspar

Match Rank:1
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--CTTGGCANGS
TACTTGGCAGA-
 A C G T A C G T G A T C G A C T G C A T C T A G T A C G G T A C T G C A G T C A C T A G T A G C
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:CTTGGCANGS
NTTGGCANN-
 G A T C G A C T G C A T C T A G T A C G G T A C T G C A G T C A C T A G T A G C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCANGS
NNTTGGCANN-
 A C G T G A T C G A C T G C A T C T A G T A C G G T A C T G C A G T C A C T A G T A G C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:CTTGGCANGS
CTTGGCAA--
 G A T C G A C T G C A T C T A G T A C G G T A C T G C A G T C A C T A G T A G C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCANGS
GGTTGGCAT--
 A C G T G A T C G A C T G C A T C T A G T A C G G T A C T G C A G T C A C T A G T A G C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:6
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCANGS
VGCTGGCA---
 A C G T G A T C G A C T G C A T C T A G T A C G G T A C T G C A G T C A C T A G T A G C
T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCANGS
NGTGGGCAT--
 A C G T G A T C G A C T G C A T C T A G T A C G G T A C T G C A G T C A C T A G T A G C
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----CTTGGCANGS-
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A C G T G A T C G A C T G C A T C T A G T A C G G T A C T G C A G T C A C T A G T A G C A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.69
Offset:-9
Orientation:forward strand
Alignment:---------CTTGGCANGS
NNTGTTTATTTTGGCA---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A C T G C A T C T A G T A C G G T A C T G C A G T C A C T A G T A G C
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:10
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTTGGCANGS-----
-TTGGCATGGTGCCA
 G A T C G A C T G C A T C T A G T A C G G T A C T G C A G T C A C T A G T A G C A C G T A C G T A C G T A C G T A C G T
A C G T G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A