Information for 4-CCTCTGGTGGCC (Motif 3)

A G T C A G T C A G C T A G T C A C G T C A T G A C T G C A G T A C T G A C T G G A T C G T A C
Reverse Opposite:
A C T G C A T G A G T C A G T C G T C A A G T C G T A C C G T A A C T G C T G A A C T G A C T G
p-value:1e-14
log p-value:-3.429e+01
Information Content per bp:1.877
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.83%
Number of Background Sequences with motif18.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets101.1 +/- 47.3bp
Average Position of motif in Background96.4 +/- 50.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.76
Offset:-6
Orientation:reverse strand
Alignment:------CCTCTGGTGGCC-
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G C T A G T C A C G T C A T G A C T G C A G T A C T G A C T G G A T C G T A C A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.75
Offset:-7
Orientation:forward strand
Alignment:-------CCTCTGGTGGCC-
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G C T A G T C A C G T C A T G A C T G C A G T A C T G A C T G G A T C G T A C A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.73
Offset:-9
Orientation:forward strand
Alignment:---------CCTCTGGTGGCC
CNNBRGCGCCCCCTGSTGGC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G C T A G T C A C G T C A T G A C T G C A G T A C T G A C T G G A T C G T A C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T

THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer

Match Rank:4
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CCTCTGGTGGCC
TGACCTCAGGTGACC
 A C G T A C G T A C G T A G T C A G T C A G C T A G T C A C G T C A T G A C T G C A G T A C T G A C T G G A T C G T A C
G A C T T A C G C G T A T G A C A G T C G A C T A T G C C T G A C A T G T A C G G C A T T A C G T C G A T G A C G T A C

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCTCTGGTGGCC-----
NNANTGGTGGTCTTNNN
 A G T C A G T C A G C T A G T C A C G T C A T G A C T G C A G T A C T G A C T G G A T C G T A C A C G T A C G T A C G T A C G T A C G T
T C A G A G C T G T C A T G C A C G A T C T A G C T A G C A G T A T C G C A T G C A G T T G A C A C G T G A C T G T C A G C A T C T A G

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CCTCTGGTGGCC
TCCCCTGGGGAC-
 A C G T A G T C A G T C A G C T A G T C A C G T C A T G A C T G C A G T A C T G A C T G G A T C G T A C
A G C T A G T C A G T C G A T C G A T C C G A T C T A G C T A G C T A G T C A G T G C A G T A C A C G T

CTCFL/MA1102.1/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----CCTCTGGTGGCC
NGTGCCCCCTGGNG---
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G C T A G T C A C G T C A T G A C T G C A G T A C T G A C T G G A T C G T A C
T C A G T A C G A G C T C A T G T G A C A T G C T G A C A G T C A T G C A C G T T C A G A T C G A G C T A T C G A C G T A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCTCTGGTGGCC
TGWCCTCARNTGACC
 A C G T A C G T A C G T A G T C A G T C A G C T A G T C A C G T C A T G A C T G C A G T A C T G A C T G G A T C G T A C
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCTCTGGTGGCC--
TGACCTTTCGTGACCTT
 A C G T A C G T A C G T A G T C A G T C A G C T A G T C A C G T C A T G A C T G C A G T A C T G A C T G G A T C G T A C A C G T A C G T
A G C T C T A G C G T A T G A C G T A C A G C T A G C T A G C T T A G C C A T G A G C T A C T G T G C A G T A C T A G C A G C T G A C T

GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCTCTGGTGGCC-
CTCCCTGGGAGGCCN
 A C G T A C G T A G T C A G T C A G C T A G T C A C G T C A T G A C T G C A G T A C T G A C T G G A T C G T A C A C G T
T A G C G C A T A G T C G A T C A T G C G A C T C T A G A C T G A C T G C T G A A C T G C T A G A G T C T G A C C G A T