Information for 24-AAATTTTGGTAA (Motif 31)

C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C T G C T A G A C G T G T C A C G T A
Reverse Opposite:
A C G T A C G T C G T A A G T C A G T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T
p-value:1e-1
log p-value:-4.396e+00
Information Content per bp:1.949
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif0.17%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets107.2 +/- 43.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)4.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AAATTTTGGTAA-
TATAAGTAGGTCAA
 A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C T G C T A G A C G T G T C A C G T A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

Arid5a/MA0602.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAATTTTGGTAA-
CTAATATTGCTAAA
 A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C T G C T A G A C G T G T C A C G T A A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAATTTTGGTAA-
CTAATATTGCTAAA
 A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C T G C T A G A C G T G T C A C G T A A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

RORB/MA1150.1/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AAATTTTGGTAA-
--AATTAGGTCAC
 C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C T G C T A G A C G T G T C A C G T A A C G T
A C G T A C G T C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C

PB0176.1_Sox5_2/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AAATTTTGGTAA
NNCTNAATTATGANN-
 A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C T G C T A G A C G T G T C A C G T A
G A C T G A T C A T G C A C G T G C A T C T G A C G T A C G A T A C G T G T C A G A C T T C A G G C T A C G A T G C T A A C G T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AAATTTTGGTAA----
-AAWCTAGGTCARDNN
 C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C T G C T A G A C G T G T C A C G T A A C G T A C G T A C G T A C G T
A C G T C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

RORC/MA1151.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AAATTTTGGTAA
ATAAGTAGGTCA
 C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C T G C T A G A C G T G T C A C G T A
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AAATTTTGGTAA
--AAYTAGGTCA
 C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C T G C T A G A C G T G T C A C G T A
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AAATTTTGGTAA
--AAYTAGGTCA
 C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C T G C T A G A C G T G T C A C G T A
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

PB0165.1_Sox11_2/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AAATTTTGGTAA-
AAAATTGTTATGAA
 A C G T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C T G C T A G A C G T G T C A C G T A A C G T
C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A