Information for 4-CTAATCCCCT (Motif 4)

T A G C A G C T G C T A C G T A C G A T A G T C G T A C A G T C A T G C C A G T
Reverse Opposite:
G T C A A T C G C T A G C A T G A C T G C G T A C G A T C G A T C T G A A T C G
p-value:1e-11
log p-value:-2.584e+01
Information Content per bp:1.826
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.82%
Number of Background Sequences with motif141.8
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets110.9 +/- 54.5bp
Average Position of motif in Background97.9 +/- 60.8bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:CTAATCCCCT-
CTAATCCTCTT
 T A G C A G C T G C T A C G T A C G A T A G T C G T A C A G T C A T G C C A G T A C G T
G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

PH0139.1_Pitx3/Jaspar

Match Rank:2
Score:0.85
Offset:-5
Orientation:reverse strand
Alignment:-----CTAATCCCCT-
GNNAGCTAATCCCCCN
 A C G T A C G T A C G T A C G T A C G T T A G C A G C T G C T A C G T A C G A T A G T C G T A C A G T C A T G C C A G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

PH0015.1_Crx/Jaspar

Match Rank:3
Score:0.85
Offset:-3
Orientation:reverse strand
Alignment:---CTAATCCCCT---
AGGCTAATCCCCAANG
 A C G T A C G T A C G T T A G C A G C T G C T A C G T A C G A T A G T C G T A C A G T C A T G C C A G T A C G T A C G T A C G T
G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

GSC/MA0648.1/Jaspar

Match Rank:4
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-CTAATCCCCT
GCTAATCCCC-
 A C G T T A G C A G C T G C T A C G T A C G A T A G T C G T A C A G T C A T G C C A G T
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T

GSC2/MA0891.1/Jaspar

Match Rank:5
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-CTAATCCCCT
CCTAATCCGC-
 A C G T T A G C A G C T G C T A C G T A C G A T A G T C G T A C A G T C A T G C C A G T
T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-CTAATCCCCT
CTTAATCCC--
 A C G T T A G C A G C T G C T A C G T A C G A T A G T C G T A C A G T C A T G C C A G T
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:7
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-CTAATCCCCT
NYTAATCCYB-
 A C G T T A G C A G C T G C T A C G T A C G A T A G T C G T A C A G T C A T G C C A G T
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:8
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:CTAATCCCCT
YTAATCCY--
 T A G C A G C T G C T A C G T A C G A T A G T C G T A C A G T C A T G C C A G T
G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:9
Score:0.82
Offset:0
Orientation:forward strand
Alignment:CTAATCCCCT
TTAATCCC--
 T A G C A G C T G C T A C G T A C G A T A G T C G T A C A G T C A T G C C A G T
G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T

PH0121.1_Obox1/Jaspar

Match Rank:10
Score:0.82
Offset:-4
Orientation:reverse strand
Alignment:----CTAATCCCCT---
NTAGTTAATCCCCTTAN
 A C G T A C G T A C G T A C G T T A G C A G C T G C T A C G T A C G A T A G T C G T A C A G T C A T G C C A G T A C G T A C G T A C G T
C T A G C G A T G C T A A C T G G C A T C G A T C G T A C T G A A C G T G T A C A G T C G A T C G A T C A G C T A G C T G C T A G C T A