Information for 3-CCGTGTAA (Motif 6)

G T A C T G A C C T A G G C A T T C A G G C A T G T C A C G T A
Reverse Opposite:
G C A T A C G T C G T A A G T C C G T A G A T C A C T G C A T G
p-value:1e-10
log p-value:-2.447e+01
Information Content per bp:1.625
Number of Target Sequences with motif175.0
Percentage of Target Sequences with motif29.07%
Number of Background Sequences with motif8746.6
Percentage of Background Sequences with motif18.02%
Average Position of motif in Targets97.2 +/- 58.8bp
Average Position of motif in Background100.1 +/- 59.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0158.1_Rhox11_2/Jaspar

Match Rank:1
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CCGTGTAA-----
AGGACGCTGTAAAGGGA
 A C G T A C G T A C G T A C G T G T A C T G A C C T A G G C A T T C A G G C A T G T C A C G T A A C G T A C G T A C G T A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

PH0085.1_Irx4/Jaspar

Match Rank:2
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CCGTGTAA----
AATATACATGTAAAACA
 A C G T A C G T A C G T A C G T A C G T G T A C T G A C C T A G G C A T T C A G G C A T G T C A C G T A A C G T A C G T A C G T A C G T
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A

PH0083.1_Irx3_1/Jaspar

Match Rank:3
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CCGTGTAA----
AAAATACATGTAATACT
 A C G T A C G T A C G T A C G T A C G T G T A C T G A C C T A G G C A T T C A G G C A T G T C A C G T A A C G T A C G T A C G T A C G T
C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCGTGTAA
GGCMATGAAA
 A C G T A C G T G T A C T G A C C T A G G C A T T C A G G C A T G T C A C G T A
C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A

PH0084.1_Irx3_2/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CCGTGTAA----
AATATACATGTAATATA
 A C G T A C G T A C G T A C G T A C G T G T A C T G A C C T A G G C A T T C A G G C A T G T C A C G T A A C G T A C G T A C G T A C G T
C G T A C G T A C G A T C G T A C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A T C G A C G A T C G T A G A C T C G A T

Rhox11/MA0629.1/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCGTGTAA-----
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A C G T G T A C T G A C C T A G G C A T T C A G G C A T G T C A C G T A A C G T A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCGTGTAA-----
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A C G T G T A C T G A C C T A G G C A T T C A G G C A T G T C A C G T A A C G T A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

MYBL2/MA0777.1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCGTGTAA-----
AACCGTTAAACGGTC
 A C G T A C G T G T A C T G A C C T A G G C A T T C A G G C A T G T C A C G T A A C G T A C G T A C G T A C G T A C G T
C T G A C T G A T G A C T A G C C T A G C A G T A G C T C G T A T G C A G C T A T G A C A T C G A T C G G A C T G A T C

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCGTGTAA--
AGGTGTGAAM
 G T A C T G A C C T A G G C A T T C A G G C A T G T C A C G T A A C G T A C G T
C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A

BARHL2/MA0635.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CCGTGTAA-
ANCGTTTANN
 A C G T G T A C T G A C C T A G G C A T T C A G G C A T G T C A C G T A A C G T
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C