Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 602)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48584)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-32	-7.431e+01	0.0000	64.0	10.63%	748.2	1.54%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-26	-6.177e+01	0.0000	72.0	11.96%	1206.3	2.48%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-25	-5.962e+01	0.0000	169.0	28.07%	5804.9	11.96%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-25	-5.956e+01	0.0000	97.0	16.11%	2231.2	4.60%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-23	-5.356e+01	0.0000	177.0	29.40%	6598.4	13.59%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-21	-5.054e+01	0.0000	202.0	33.55%	8300.1	17.10%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-21	-5.021e+01	0.0000	190.0	31.56%	7584.6	15.62%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-21	-4.859e+01	0.0000	131.0	21.76%	4304.3	8.87%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-18	-4.360e+01	0.0000	157.0	26.08%	6043.3	12.45%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-18	-4.311e+01	0.0000	164.0	27.24%	6489.8	13.37%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-17	-3.984e+01	0.0000	225.0	37.38%	10627.1	21.89%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-16	-3.839e+01	0.0000	128.0	21.26%	4700.8	9.68%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-16	-3.755e+01	0.0000	208.0	34.55%	9693.9	19.97%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-16	-3.728e+01	0.0000	239.0	39.70%	11819.2	24.34%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-15	-3.599e+01	0.0000	196.0	32.56%	9039.1	18.62%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-15	-3.529e+01	0.0000	192.0	31.89%	8838.4	18.21%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-14	-3.350e+01	0.0000	127.0	21.10%	4954.0	10.20%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-14	-3.349e+01	0.0000	219.0	36.38%	10810.0	22.27%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-12	-2.944e+01	0.0000	286.0	47.51%	16060.6	33.08%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e-11	-2.550e+01	0.0000	152.0	25.25%	7128.2	14.68%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-10	-2.391e+01	0.0000	182.0	30.23%	9280.3	19.12%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-10	-2.376e+01	0.0000	76.0	12.62%	2710.4	5.58%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-9	-2.172e+01	0.0000	193.0	32.06%	10291.8	21.20%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-7	-1.763e+01	0.0000	84.0	13.95%	3595.9	7.41%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-7	-1.735e+01	0.0000	71.0	11.79%	2854.7	5.88%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-6	-1.550e+01	0.0000	84.0	13.95%	3780.5	7.79%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-6	-1.402e+01	0.0000	386.0	64.12%	26405.1	54.39%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-5	-1.309e+01	0.0000	62.0	10.30%	2663.5	5.49%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-4	-1.131e+01	0.0002	208.0	34.55%	12946.4	26.67%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-4	-9.469e+00	0.0011	79.0	13.12%	4108.5	8.46%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-4	-9.425e+00	0.0011	60.0	9.97%	2887.3	5.95%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-3	-8.247e+00	0.0035	244.0	40.53%	16351.9	33.68%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-3	-8.056e+00	0.0041	59.0	9.80%	2978.9	6.14%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-3	-7.677e+00	0.0058	24.0	3.99%	896.9	1.85%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-3	-7.401e+00	0.0075	47.0	7.81%	2287.6	4.71%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-2	-6.406e+00	0.0196	149.0	24.75%	9602.2	19.78%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-2	-6.027e+00	0.0279	7.0	1.16%	144.5	0.30%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-2	-5.953e+00	0.0293	147.0	24.42%	9563.7	19.70%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-2	-5.898e+00	0.0301	9.0	1.50%	231.4	0.48%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-2	-5.831e+00	0.0314	13.0	2.16%	424.9	0.88%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-2	-5.486e+00	0.0433	140.0	23.26%	9159.4	18.87%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-2	-5.486e+00	0.0433	24.0	3.99%	1062.0	2.19%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-2	-5.422e+00	0.0440	66.0	10.96%	3824.2	7.88%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-2	-5.365e+00	0.0455	93.0	15.45%	5743.4	11.83%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-2	-5.331e+00	0.0460	81.0	13.46%	4893.1	10.08%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-2	-5.190e+00	0.0518	34.0	5.65%	1712.1	3.53%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-2	-4.945e+00	0.0648	60.0	9.97%	3491.5	7.19%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-2	-4.857e+00	0.0693	31.0	5.15%	1559.5	3.21%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-2	-4.763e+00	0.0746	15.0	2.49%	595.1	1.23%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-2	-4.740e+00	0.0748	115.0	19.10%	7494.1	15.44%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-4.502e+00	0.0930	60.0	9.97%	3571.0	7.36%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-4.433e+00	0.0978	18.0	2.99%	795.3	1.64%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-1	-4.352e+00	0.1040	71.0	11.79%	4380.9	9.02%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-4.212e+00	0.1174	63.0	10.47%	3840.0	7.91%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-4.137e+00	0.1243	17.0	2.82%	761.5	1.57%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-1	-4.053e+00	0.1327	28.0	4.65%	1463.3	3.01%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-3.630e+00	0.1992	18.0	2.99%	871.8	1.80%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-3.543e+00	0.2134	57.0	9.47%	3551.8	7.32%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-3.436e+00	0.2335	123.0	20.43%	8471.0	17.45%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-1	-3.394e+00	0.2396	58.0	9.63%	3656.6	7.53%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-1	-3.392e+00	0.2396	47.0	7.81%	2870.1	5.91%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-1	-3.340e+00	0.2446	55.0	9.14%	3452.4	7.11%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-3.312e+00	0.2476	6.0	1.00%	195.9	0.40%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-3.303e+00	0.2476	102.0	16.94%	6927.6	14.27%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-3.197e+00	0.2693	10.0	1.66%	424.0	0.87%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-3.107e+00	0.2900	33.0	5.48%	1941.4	4.00%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-1	-3.105e+00	0.2900	15.0	2.49%	737.8	1.52%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-3.034e+00	0.3030	33.0	5.48%	1954.8	4.03%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-3.005e+00	0.3073	4.0	0.66%	110.8	0.23%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-2.909e+00	0.3334	10.0	1.66%	447.0	0.92%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-2.891e+00	0.3346	226.0	37.54%	16682.1	34.36%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-2.886e+00	0.3346	108.0	17.94%	7517.0	15.48%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.862e+00	0.3346	10.0	1.66%	450.6	0.93%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.862e+00	0.3346	10.0	1.66%	450.6	0.93%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-2.840e+00	0.3346	46.0	7.64%	2916.6	6.01%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-2.776e+00	0.3507	23.0	3.82%	1307.3	2.69%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-1	-2.735e+00	0.3608	129.0	21.43%	9179.6	18.91%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-1	-2.728e+00	0.3608	24.0	3.99%	1383.4	2.85%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-2.714e+00	0.3608	9.0	1.50%	402.6	0.83%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-1	-2.703e+00	0.3608	87.0	14.45%	5989.4	12.34%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-1	-2.691e+00	0.3608	20.0	3.32%	1116.6	2.30%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-2.659e+00	0.3655	29.0	4.82%	1742.0	3.59%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-2.576e+00	0.3923	8.0	1.33%	353.7	0.73%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-1	-2.528e+00	0.4066	6.0	1.00%	239.4	0.49%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-2.520e+00	0.4066	33.0	5.48%	2052.6	4.23%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-1	-2.519e+00	0.4066	46.0	7.64%	2992.7	6.16%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-1	-2.424e+00	0.4357	7.0	1.16%	305.6	0.63%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-1	-2.366e+00	0.4565	44.0	7.31%	2884.3	5.94%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-2.363e+00	0.4565	19.0	3.16%	1097.7	2.26%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-1	-2.346e+00	0.4565	18.0	2.99%	1031.2	2.12%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-2.335e+00	0.4565	36.0	5.98%	2308.8	4.76%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-2.324e+00	0.4565	9.0	1.50%	437.3	0.90%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-2.320e+00	0.4565	35.0	5.81%	2239.8	4.61%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-2.241e+00	0.4841	33.0	5.48%	2112.7	4.35%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-2.223e+00	0.4881	101.0	16.78%	7230.7	14.89%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.188e+00	0.4999	223.0	37.04%	16798.2	34.60%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-2.185e+00	0.4999	58.0	9.63%	3974.5	8.19%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-2.178e+00	0.4999	30.0	4.98%	1909.4	3.93%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-2.079e+00	0.5406	42.0	6.98%	2812.9	5.79%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-2.059e+00	0.5458	1.0	0.17%	11.3	0.02%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-2.053e+00	0.5458	30.0	4.98%	1937.2	3.99%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-2.045e+00	0.5458	120.0	19.93%	8775.2	18.07%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-2.039e+00	0.5458	6.0	1.00%	276.0	0.57%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.033e+00	0.5458	12.0	1.99%	667.7	1.38%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.029e+00	0.5458	14.0	2.33%	804.7	1.66%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-2.005e+00	0.5458	50.0	8.31%	3430.7	7.07%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.934e+00	0.5780	17.0	2.82%	1028.2	2.12%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.929e+00	0.5780	2.0	0.33%	54.1	0.11%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.920e+00	0.5780	63.0	10.47%	4440.6	9.15%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.896e+00	0.5845	15.0	2.49%	894.9	1.84%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.877e+00	0.5902	32.0	5.32%	2126.6	4.38%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-1.873e+00	0.5902	8.0	1.33%	419.1	0.86%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.870e+00	0.5902	53.0	8.80%	3699.4	7.62%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.819e+00	0.6088	8.0	1.33%	425.3	0.88%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.781e+00	0.6271	60.0	9.97%	4262.7	8.78%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.769e+00	0.6294	31.0	5.15%	2080.2	4.28%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.748e+00	0.6367	11.0	1.83%	638.6	1.32%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.716e+00	0.6523	31.0	5.15%	2094.3	4.31%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.708e+00	0.6523	47.0	7.81%	3299.5	6.80%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.695e+00	0.6547	197.0	32.72%	15023.1	30.94%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.643e+00	0.6840	19.0	3.16%	1227.7	2.53%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.628e+00	0.6888	7.0	1.16%	380.2	0.78%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.602e+00	0.7011	11.0	1.83%	660.2	1.36%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.598e+00	0.7011	15.0	2.49%	946.6	1.95%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.568e+00	0.7140	138.0	22.92%	10432.7	21.49%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-1.558e+00	0.7149	80.0	13.29%	5895.6	12.14%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.552e+00	0.7149	7.0	1.16%	389.5	0.80%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.546e+00	0.7149	29.0	4.82%	1991.5	4.10%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-1.531e+00	0.7180	3.0	0.50%	129.1	0.27%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.528e+00	0.7180	4.0	0.66%	192.7	0.40%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.510e+00	0.7221	24.0	3.99%	1627.6	3.35%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.496e+00	0.7261	48.0	7.97%	3450.5	7.11%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.489e+00	0.7261	5.0	0.83%	261.5	0.54%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.483e+00	0.7261	17.0	2.82%	1115.0	2.30%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.461e+00	0.7355	54.0	8.97%	3925.4	8.09%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.451e+00	0.7376	9.0	1.50%	542.5	1.12%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.448e+00	0.7376	98.0	16.28%	7355.1	15.15%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.440e+00	0.7376	6.0	1.00%	334.7	0.69%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.431e+00	0.7376	5.0	0.83%	267.5	0.55%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-1.404e+00	0.7507	53.0	8.80%	3871.2	7.97%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.390e+00	0.7563	28.0	4.65%	1961.4	4.04%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.367e+00	0.7681	32.0	5.32%	2272.2	4.68%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-1.342e+00	0.7823	37.0	6.15%	2663.6	5.49%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.340e+00	0.7823	74.0	12.29%	5533.2	11.40%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.323e+00	0.7863	7.0	1.16%	419.2	0.86%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.322e+00	0.7863	125.0	20.76%	9555.6	19.68%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.322e+00	0.7863	19.0	3.16%	1301.1	2.68%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.321e+00	0.7863	10.0	1.66%	635.7	1.31%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.314e+00	0.7863	60.0	9.97%	4453.4	9.17%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.285e+00	0.7894	141.0	23.42%	10847.7	22.34%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-1.273e+00	0.7939	14.0	2.33%	939.1	1.93%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.273e+00	0.7939	276.0	45.85%	21646.8	44.59%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.261e+00	0.7939	8.0	1.33%	500.8	1.03%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.256e+00	0.7939	19.0	3.16%	1318.9	2.72%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.250e+00	0.7939	4.0	0.66%	218.0	0.45%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.249e+00	0.7939	38.0	6.31%	2774.4	5.71%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-1.248e+00	0.7939	88.0	14.62%	6680.7	13.76%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.232e+00	0.7939	15.0	2.49%	1023.7	2.11%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.227e+00	0.7939	24.0	3.99%	1706.8	3.52%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.221e+00	0.7939	121.0	20.10%	9304.1	19.16%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.199e+00	0.8016	39.0	6.48%	2871.3	5.91%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-1.194e+00	0.8016	35.0	5.81%	2563.0	5.28%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.167e+00	0.8176	34.0	5.65%	2496.6	5.14%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.161e+00	0.8176	19.0	3.16%	1344.1	2.77%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-1.150e+00	0.8213	57.0	9.47%	4297.8	8.85%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-1.147e+00	0.8213	14.0	2.33%	969.0	2.00%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-1.143e+00	0.8213	147.0	24.42%	11425.6	23.53%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.094e+00	0.8530	26.0	4.32%	1903.6	3.92%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.092e+00	0.8530	6.0	1.00%	381.3	0.79%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.083e+00	0.8530	17.0	2.82%	1213.3	2.50%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.077e+00	0.8530	44.0	7.31%	3314.0	6.83%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.060e+00	0.8623	133.0	22.09%	10372.9	21.37%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.059e+00	0.8623	86.0	14.29%	6636.2	13.67%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.047e+00	0.8637	21.0	3.49%	1532.3	3.16%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.045e+00	0.8637	9.0	1.50%	614.0	1.26%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.035e+00	0.8639	102.0	16.94%	7922.1	16.32%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.034e+00	0.8639	29.0	4.82%	2158.1	4.45%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.024e+00	0.8639	76.0	12.62%	5865.3	12.08%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.016e+00	0.8657	15.0	2.49%	1078.1	2.22%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.016e+00	0.8657	51.0	8.47%	3893.0	8.02%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.006e+00	0.8657	12.0	1.99%	850.1	1.75%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.001e+00	0.8657	75.0	12.46%	5800.3	11.95%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-9.988e-01	0.8657	20.0	3.32%	1470.2	3.03%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-9.944e-01	0.8657	12.0	1.99%	853.4	1.76%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-9.756e-01	0.8721	6.0	1.00%	400.0	0.82%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-9.686e-01	0.8735	20.0	3.32%	1480.1	3.05%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-9.483e-01	0.8866	16.0	2.66%	1175.2	2.42%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-9.450e-01	0.8866	16.0	2.66%	1176.5	2.42%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-9.449e-01	0.8866	20.0	3.32%	1488.7	3.07%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-9.296e-01	0.8892	29.0	4.82%	2200.5	4.53%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-9.280e-01	0.8892	23.0	3.82%	1730.0	3.56%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-9.197e-01	0.8892	13.0	2.16%	950.0	1.96%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-9.145e-01	0.8892	26.0	4.32%	1970.7	4.06%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-8.633e-01	0.9305	55.0	9.14%	4295.2	8.85%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-8.602e-01	0.9305	5.0	0.83%	344.6	0.71%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-8.377e-01	0.9449	66.0	10.96%	5189.3	10.69%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-8.286e-01	0.9487	39.0	6.48%	3040.5	6.26%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-8.268e-01	0.9487	16.0	2.66%	1215.0	2.50%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-8.169e-01	0.9502	1.0	0.17%	47.8	0.10%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-8.137e-01	0.9502	21.0	3.49%	1615.7	3.33%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-8.122e-01	0.9502	7.0	1.16%	509.2	1.05%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-8.091e-01	0.9502	41.0	6.81%	3210.0	6.61%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-7.973e-01	0.9502	53.0	8.80%	4176.9	8.60%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-7.835e-01	0.9584	114.0	18.94%	9078.1	18.70%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-7.812e-01	0.9584	12.0	1.99%	912.3	1.88%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-7.791e-01	0.9584	33.0	5.48%	2587.4	5.33%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-7.736e-01	0.9584	5.0	0.83%	360.3	0.74%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-7.724e-01	0.9584	46.0	7.64%	3631.7	7.48%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-7.678e-01	0.9584	3.0	0.50%	204.8	0.42%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-7.669e-01	0.9584	16.0	2.66%	1235.1	2.54%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-7.668e-01	0.9584	100.0	16.61%	7968.0	16.41%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-7.575e-01	0.9584	1.0	0.17%	52.0	0.11%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-7.533e-01	0.9584	5.0	0.83%	364.4	0.75%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-7.476e-01	0.9584	3.0	0.50%	207.5	0.43%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-7.450e-01	0.9584	43.0	7.14%	3407.3	7.02%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-7.277e-01	0.9584	62.0	10.30%	4946.0	10.19%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-7.184e-01	0.9616	12.0	1.99%	932.6	1.92%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-7.105e-01	0.9647	30.0	4.98%	2382.8	4.91%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-7.078e-01	0.9647	18.0	2.99%	1418.8	2.92%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-7.006e-01	0.9655	10.0	1.66%	777.0	1.60%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-6.983e-01	0.9655	20.0	3.32%	1583.5	3.26%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-6.850e-01	0.9719	13.0	2.16%	1024.9	2.11%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-6.780e-01	0.9743	68.0	11.30%	5466.7	11.26%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.774e-01	0.9743	29.0	4.82%	2319.3	4.78%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-6.762e-01	0.9743	7.0	1.16%	542.0	1.12%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-6.756e-01	0.9743	33.0	5.48%	2644.0	5.45%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-6.641e-01	0.9743	42.0	6.98%	3377.9	6.96%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-6.604e-01	0.9743	18.0	2.99%	1438.4	2.96%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-6.548e-01	0.9743	5.0	0.83%	385.8	0.79%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-6.543e-01	0.9743	58.0	9.63%	4677.4	9.63%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-6.434e-01	0.9743	12.0	1.99%	958.9	1.98%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-6.367e-01	0.9759	6.0	1.00%	471.7	0.97%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-6.353e-01	0.9759	49.0	8.14%	3963.7	8.16%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-6.240e-01	0.9800	74.0	12.29%	5996.1	12.35%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-6.172e-01	0.9825	40.0	6.64%	3247.0	6.69%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-6.148e-01	0.9825	14.0	2.33%	1132.7	2.33%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-6.137e-01	0.9825	64.0	10.63%	5195.3	10.70%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-6.128e-01	0.9825	190.0	31.56%	15384.8	31.69%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-5.975e-01	0.9853	10.0	1.66%	811.2	1.67%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-5.869e-01	0.9916	49.0	8.14%	3999.7	8.24%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-5.843e-01	0.9916	29.0	4.82%	2372.0	4.89%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-5.820e-01	0.9916	30.0	4.98%	2455.4	5.06%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-5.766e-01	0.9916	11.0	1.83%	901.7	1.86%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-5.735e-01	0.9916	70.0	11.63%	5717.1	11.78%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-5.682e-01	0.9916	128.0	21.26%	10426.9	21.48%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-5.661e-01	0.9916	143.0	23.75%	11643.8	23.98%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-5.623e-01	0.9916	1.0	0.17%	68.1	0.14%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-5.520e-01	0.9937	26.0	4.32%	2146.0	4.42%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-5.514e-01	0.9937	242.0	40.20%	19665.4	40.51%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-5.405e-01	0.9972	36.0	5.98%	2973.6	6.12%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-5.386e-01	0.9972	104.0	17.28%	8514.3	17.54%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-5.331e-01	0.9972	24.0	3.99%	1993.1	4.11%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-5.307e-01	0.9972	104.0	17.28%	8523.7	17.56%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-5.232e-01	0.9986	6.0	1.00%	503.6	1.04%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-5.200e-01	0.9986	62.0	10.30%	5115.6	10.54%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-5.168e-01	0.9986	6.0	1.00%	505.2	1.04%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-5.136e-01	0.9986	6.0	1.00%	506.6	1.04%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-5.085e-01	0.9986	53.0	8.80%	4390.8	9.04%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-5.041e-01	0.9986	6.0	1.00%	509.1	1.05%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-5.034e-01	0.9986	20.0	3.32%	1680.5	3.46%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-5.001e-01	0.9986	5.0	0.83%	425.1	0.88%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-4.917e-01	0.9991	36.0	5.98%	3009.4	6.20%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-4.911e-01	0.9991	11.0	1.83%	937.0	1.93%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-4.889e-01	0.9991	153.0	25.42%	12554.9	25.86%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-4.877e-01	0.9991	9.0	1.50%	770.0	1.59%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-4.835e-01	0.9991	8.0	1.33%	686.6	1.41%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-4.735e-01	0.9991	15.0	2.49%	1280.1	2.64%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-4.707e-01	0.9991	42.0	6.98%	3520.1	7.25%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-4.642e-01	1.0000	55.0	9.14%	4595.4	9.47%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-4.612e-01	1.0000	12.0	1.99%	1034.6	2.13%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-4.607e-01	1.0000	37.0	6.15%	3116.4	6.42%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-4.547e-01	1.0000	22.0	3.65%	1876.2	3.86%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-4.547e-01	1.0000	125.0	20.76%	10326.6	21.27%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-4.527e-01	1.0000	3.0	0.50%	264.5	0.54%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-4.516e-01	1.0000	9.0	1.50%	784.7	1.62%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-4.475e-01	1.0000	15.0	2.49%	1294.3	2.67%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-4.420e-01	1.0000	15.0	2.49%	1297.3	2.67%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-4.409e-01	1.0000	3.0	0.50%	267.4	0.55%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-4.338e-01	1.0000	104.0	17.28%	8642.9	17.80%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-4.217e-01	1.0000	26.0	4.32%	2233.7	4.60%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-4.178e-01	1.0000	17.0	2.82%	1480.9	3.05%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-4.173e-01	1.0000	4.0	0.66%	363.4	0.75%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-4.133e-01	1.0000	7.0	1.16%	628.3	1.29%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-4.106e-01	1.0000	93.0	15.45%	7773.5	16.01%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-3.964e-01	1.0000	35.0	5.81%	3005.5	6.19%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-3.901e-01	1.0000	45.0	7.48%	3843.4	7.92%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-3.742e-01	1.0000	13.0	2.16%	1166.4	2.40%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-3.740e-01	1.0000	2.0	0.33%	192.3	0.40%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-3.712e-01	1.0000	24.0	3.99%	2104.4	4.33%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-3.700e-01	1.0000	3.0	0.50%	287.1	0.59%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-3.671e-01	1.0000	76.0	12.62%	6434.4	13.25%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-3.600e-01	1.0000	64.0	10.63%	5452.4	11.23%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-3.509e-01	1.0000	55.0	9.14%	4717.1	9.72%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-3.457e-01	1.0000	29.0	4.82%	2548.8	5.25%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-3.422e-01	1.0000	62.0	10.30%	5309.1	10.94%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-3.414e-01	1.0000	43.0	7.14%	3728.4	7.68%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-3.408e-01	1.0000	42.0	6.98%	3645.9	7.51%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-3.353e-01	1.0000	62.0	10.30%	5318.4	10.95%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-3.302e-01	1.0000	94.0	15.61%	7971.4	16.42%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-3.262e-01	1.0000	32.0	5.32%	2820.3	5.81%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-3.244e-01	1.0000	3.0	0.50%	302.8	0.62%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-3.213e-01	1.0000	21.0	3.49%	1890.5	3.89%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-3.213e-01	1.0000	41.0	6.81%	3583.3	7.38%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-3.191e-01	1.0000	2.0	0.33%	207.9	0.43%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-3.187e-01	1.0000	3.0	0.50%	304.6	0.63%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-3.169e-01	1.0000	1.0	0.17%	105.1	0.22%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-3.063e-01	1.0000	264.0	43.85%	21873.2	45.05%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-3.052e-01	1.0000	31.0	5.15%	2757.6	5.68%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-3.044e-01	1.0000	12.0	1.99%	1124.0	2.32%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-3.034e-01	1.0000	1.0	0.17%	108.3	0.22%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-2.939e-01	1.0000	54.0	8.97%	4707.8	9.70%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.926e-01	1.0000	9.0	1.50%	866.2	1.78%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-2.865e-01	1.0000	70.0	11.63%	6053.8	12.47%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-2.816e-01	1.0000	61.0	10.13%	5311.0	10.94%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-2.668e-01	1.0000	131.0	21.76%	11131.1	22.93%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-2.607e-01	1.0000	21.0	3.49%	1947.0	4.01%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.591e-01	1.0000	48.0	7.97%	4252.4	8.76%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-2.574e-01	1.0000	56.0	9.30%	4928.8	10.15%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-2.561e-01	1.0000	23.0	3.82%	2124.3	4.38%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-2.526e-01	1.0000	81.0	13.46%	7026.9	14.47%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-2.504e-01	1.0000	34.0	5.65%	3076.7	6.34%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.498e-01	1.0000	14.0	2.33%	1343.1	2.77%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-2.405e-01	1.0000	241.0	40.03%	20170.3	41.55%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-2.355e-01	1.0000	64.0	10.63%	5636.2	11.61%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.352e-01	1.0000	24.0	3.99%	2234.4	4.60%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-2.318e-01	1.0000	31.0	5.15%	2843.4	5.86%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-2.318e-01	1.0000	4.0	0.66%	439.5	0.91%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-2.284e-01	1.0000	24.0	3.99%	2242.0	4.62%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-2.279e-01	1.0000	15.0	2.49%	1452.1	2.99%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-2.248e-01	1.0000	114.0	18.94%	9821.6	20.23%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-2.218e-01	1.0000	16.0	2.66%	1547.7	3.19%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-2.186e-01	1.0000	24.0	3.99%	2254.3	4.64%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-2.182e-01	1.0000	40.0	6.64%	3634.6	7.49%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-2.081e-01	1.0000	11.0	1.83%	1111.7	2.29%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-2.079e-01	1.0000	8.0	1.33%	836.0	1.72%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.041e-01	1.0000	41.0	6.81%	3742.8	7.71%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-2.027e-01	1.0000	101.0	16.78%	8794.0	18.11%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.768e-01	1.0000	36.0	5.98%	3358.7	6.92%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-1.759e-01	1.0000	17.0	2.82%	1689.8	3.48%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.742e-01	1.0000	18.0	2.99%	1781.8	3.67%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.724e-01	1.0000	22.0	3.65%	2140.0	4.41%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.637e-01	1.0000	6.0	1.00%	682.2	1.41%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-1.598e-01	1.0000	35.0	5.81%	3302.1	6.80%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.556e-01	1.0000	8.0	1.33%	883.8	1.82%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.393e-01	1.0000	133.0	22.09%	11635.9	23.97%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.367e-01	1.0000	40.0	6.64%	3785.0	7.80%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.322e-01	1.0000	3.0	0.50%	403.3	0.83%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.295e-01	1.0000	24.0	3.99%	2390.4	4.92%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.276e-01	1.0000	23.0	3.82%	2304.9	4.75%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.269e-01	1.0000	8.0	1.33%	916.4	1.89%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.259e-01	1.0000	24.0	3.99%	2397.3	4.94%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.258e-01	1.0000	5.0	0.83%	619.1	1.28%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-1.240e-01	1.0000	1.0	0.17%	173.2	0.36%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.234e-01	1.0000	44.0	7.31%	4166.0	8.58%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.207e-01	1.0000	8.0	1.33%	924.1	1.90%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-1.198e-01	1.0000	85.0	14.12%	7685.4	15.83%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.149e-01	1.0000	67.0	11.13%	6171.1	12.71%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.086e-01	1.0000	2.0	0.33%	310.2	0.64%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.061e-01	1.0000	132.0	21.93%	11681.8	24.06%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-1.040e-01	1.0000	62.0	10.30%	5778.5	11.90%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.011e-01	1.0000	47.0	7.81%	4489.6	9.25%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-9.926e-02	1.0000	27.0	4.49%	2726.2	5.62%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-9.710e-02	1.0000	9.0	1.50%	1057.4	2.18%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-9.705e-02	1.0000	54.0	8.97%	5111.1	10.53%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-9.007e-02	1.0000	77.0	12.79%	7116.6	14.66%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-8.598e-02	1.0000	111.0	18.44%	10016.1	20.63%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-8.345e-02	1.0000	5.0	0.83%	673.4	1.39%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-8.154e-02	1.0000	10.0	1.66%	1184.4	2.44%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-8.138e-02	1.0000	33.0	5.48%	3316.0	6.83%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-8.096e-02	1.0000	15.0	2.49%	1667.9	3.44%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-8.012e-02	1.0000	8.0	1.33%	988.1	2.04%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-7.832e-02	1.0000	46.0	7.64%	4480.0	9.23%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-7.718e-02	1.0000	14.0	2.33%	1581.5	3.26%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-7.706e-02	1.0000	55.0	9.14%	5273.2	10.86%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-7.667e-02	1.0000	49.0	8.14%	4750.6	9.79%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-7.440e-02	1.0000	26.0	4.32%	2706.5	5.57%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-6.936e-02	1.0000	85.0	14.12%	7897.1	16.27%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-6.925e-02	1.0000	21.0	3.49%	2262.6	4.66%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-6.837e-02	1.0000	53.0	8.80%	5136.5	10.58%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-6.699e-02	1.0000	179.0	29.73%	15794.7	32.53%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-6.675e-02	1.0000	7.0	1.16%	913.8	1.88%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-6.404e-02	1.0000	5.0	0.83%	707.5	1.46%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-6.306e-02	1.0000	25.0	4.15%	2653.6	5.47%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-6.144e-02	1.0000	40.0	6.64%	4018.1	8.28%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-5.785e-02	1.0000	26.0	4.32%	2765.8	5.70%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-5.501e-02	1.0000	77.0	12.79%	7293.4	15.02%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-5.217e-02	1.0000	17.0	2.82%	1943.0	4.00%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-4.811e-02	1.0000	1.0	0.17%	247.0	0.51%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-4.689e-02	1.0000	23.0	3.82%	2533.8	5.22%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-4.654e-02	1.0000	11.0	1.83%	1376.8	2.84%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-4.252e-02	1.0000	98.0	16.28%	9188.9	18.93%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-3.931e-02	1.0000	81.0	13.46%	7753.1	15.97%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-3.500e-02	1.0000	1.0	0.17%	271.8	0.56%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-3.357e-02	1.0000	59.0	9.80%	5879.2	12.11%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-3.105e-02	1.0000	5.0	0.83%	797.6	1.64%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-2.649e-02	1.0000	1.0	0.17%	293.1	0.60%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-2.355e-02	1.0000	81.0	13.46%	7919.7	16.31%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-2.058e-02	1.0000	1.0	0.17%	313.2	0.65%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.023e-02	1.0000	48.0	7.97%	5034.0	10.37%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.947e-02	1.0000	2.0	0.33%	472.4	0.97%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.947e-02	1.0000	2.0	0.33%	472.4	0.97%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.692e-02	1.0000	2.0	0.33%	485.9	1.00%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-1.439e-02	1.0000	54.0	8.97%	5664.1	11.67%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.306e-02	1.0000	36.0	5.98%	4032.1	8.31%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-1.130e-02	1.0000	29.0	4.82%	3399.1	7.00%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-9.137e-03	1.0000	51.0	8.47%	5504.6	11.34%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-5.138e-03	1.0000	13.0	2.16%	1924.4	3.96%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-3.985e-03	1.0000	62.0	10.30%	6710.7	13.82%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-3.180e-03	1.0000	6.0	1.00%	1185.4	2.44%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-1.760e-03	1.0000	154.0	25.58%	15006.3	30.91%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-1.358e-03	1.0000	44.0	7.31%	5263.7	10.84%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-9.740e-04	1.0000	1.0	0.17%	556.8	1.15%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-4.820e-04	1.0000	14.0	2.33%	2363.7	4.87%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	0.000e+00	1.0000	0.0	0.00%	177.7	0.37%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	0.000e+00	1.0000	0.0	0.00%	298.3	0.61%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	42.1	0.09%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	0.000e+00	1.0000	0.0	0.00%	218.3	0.45%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	37.0	0.08%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	18.5	0.04%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	61.8	0.13%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	109.3	0.23%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	39.7	0.08%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	117.4	0.24%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	4.8	0.01%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	28.5	0.06%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	107.9	0.22%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	101.6	0.21%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	19.5	0.04%