Information for 11-AGAATTAGGACA (Motif 13)

C G T A A C T G C G T A C G T A A C G T A C G T G T C A A C T G A C T G C G T A G T A C C G T A
Reverse Opposite:
A C G T A C T G C G A T A G T C A G T C A C G T C G T A C G T A C G A T A C G T A G T C A C G T
p-value:1e-10
log p-value:-2.312e+01
Information Content per bp:1.906
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets103.7 +/- 60.9bp
Average Position of motif in Background114.7 +/- 38.1bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.73
Offset:2
Orientation:forward strand
Alignment:AGAATTAGGACA
--AAYTAGGTCA
 C G T A A C T G C G T A C G T A A C G T A C G T G T C A A C T G A C T G C G T A G T A C C G T A
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.73
Offset:2
Orientation:forward strand
Alignment:AGAATTAGGACA
--AAYTAGGTCA
 C G T A A C T G C G T A C G T A A C G T A C G T G T C A A C T G A C T G C G T A G T A C C G T A
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:3
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AGAATTAGGACA-
-WAABTAGGTCAV
 C G T A A C T G C G T A C G T A A C G T A C G T G T C A A C T G A C T G C G T A G T A C C G T A A C G T
A C G T C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G

RORB/MA1150.1/Jaspar

Match Rank:4
Score:0.72
Offset:2
Orientation:forward strand
Alignment:AGAATTAGGACA-
--AATTAGGTCAC
 C G T A A C T G C G T A C G T A A C G T A C G T G T C A A C T G A C T G C G T A G T A C C G T A A C G T
A C G T A C G T C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C

RORA(var.2)/MA0072.1/Jaspar

Match Rank:5
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AGAATTAGGACA-
TATAAGTAGGTCAA
 A C G T C G T A A C T G C G T A C G T A A C G T A C G T G T C A A C T G A C T G C G T A G T A C C G T A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

RORC/MA1151.1/Jaspar

Match Rank:6
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AGAATTAGGACA
ATAAGTAGGTCA
 C G T A A C T G C G T A C G T A A C G T A C G T G T C A A C T G A C T G C G T A G T A C C G T A
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:7
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AGAATTAGGACA----
-AAWCTAGGTCARDNN
 C G T A A C T G C G T A C G T A A C G T A C G T G T C A A C T G A C T G C G T A G T A C C G T A A C G T A C G T A C G T A C G T
A C G T C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

PB0096.1_Zfp187_1/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGAATTAGGACA---
-TTATTAGTACATAN
 C G T A A C T G C G T A C G T A A C G T A C G T G T C A A C T G A C T G C G T A G T A C C G T A A C G T A C G T A C G T
A C G T C A G T C G A T C G T A G A C T C G A T T C G A C T A G G A C T G C T A A G T C C T G A A G C T C T G A T C G A

PB0177.1_Sox7_2/Jaspar

Match Rank:9
Score:0.63
Offset:-11
Orientation:reverse strand
Alignment:-----------AGAATTAGGACA
NNCNNNCNCANACAATTAGNAC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A C G T A A C G T A C G T G T C A A C T G A C T G C G T A G T A C C G T A
T C G A A T C G T G A C C A T G A G C T G T C A A G T C C G T A A T G C C T G A A T G C C G T A A G T C C G T A C G T A G C A T C A G T G C T A T A C G A T G C G C T A T G A C A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.60
Offset:4
Orientation:forward strand
Alignment:AGAATTAGGACA
----TRAGGTCA
 C G T A A C T G C G T A C G T A A C G T A C G T G T C A A C T G A C T G C G T A G T A C C G T A
A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A