Information for 3-CTCTCATTACAA (Motif 3)

A G T C A C G T A G T C C G A T T G A C C G T A G A C T C A G T C T G A A G T C C G T A C G T A
Reverse Opposite:
A C G T C G A T C T A G G A C T G T C A C T G A C G A T A C T G C G T A C T A G T C G A A C T G
p-value:1e-16
log p-value:-3.764e+01
Information Content per bp:1.763
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.92%
Number of Background Sequences with motif51.2
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets85.9 +/- 50.3bp
Average Position of motif in Background94.1 +/- 53.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTCTCATTACAA
-TTTCATTRCC-
 A G T C A C G T A G T C C G A T T G A C C G T A G A C T C A G T C T G A A G T C C G T A C G T A
A C G T G A C T A G C T G A C T A T G C G C T A A C G T A C G T C T G A A T G C G A T C A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CTCTCATTACAA-----
-TAAGATTATAATACGG
 A G T C A C G T A G T C C G A T T G A C C G T A G A C T C A G T C T G A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G

PB0064.1_Sox14_1/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTCTCATTACAA-----
-NNTAATTATAATTNNN
 A G T C A C G T A G T C C G A T T G A C C G T A G A C T C A G T C T G A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C A T G G T C A G C A T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C T A G G T A C

PB0079.1_Sry_1/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTCTCATTACAA-----
-NANTATTATAATTNNN
 A G T C A C G T A G T C C G A T T G A C C G T A G A C T C A G T C T G A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

POU6F2/MA0793.1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CTCTCATTACAA
AGCTCATTAT--
 A G T C A C G T A G T C C G A T T G A C C G T A G A C T C A G T C T G A A G T C C G T A C G T A
C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T A C G T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CTCTCATTACAA
GKVTCADRTTWC--
 A C G T A C G T A G T C A C G T A G T C C G A T T G A C C G T A G A C T C A G T C T G A A G T C C G T A C G T A
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T

PB0069.1_Sox21_1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CTCTCATTACAA-----
-TTTAATTATAATTAAG
 A G T C A C G T A G T C C G A T T G A C C G T A G A C T C A G T C T G A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G A C T G C A T G A C T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C A T G

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CTCTCATTACAA
GKMTCADRTTWC--
 A C G T A C G T A G T C A C G T A G T C C G A T T G A C C G T A G A C T C A G T C T G A A G T C C G T A C G T A
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T A C G T

PB0194.1_Zbtb12_2/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CTCTCATTACAA----
-TATCATTAGAACGCT
 A G T C A C G T A G T C C G A T T G A C C G T A G A C T C A G T C T G A A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T G C A T T G C A G A C T A T G C T C G A C G A T C A G T C T G A C A T G G C T A G T C A G T A C A C T G A G T C C G A T

PH0169.1_Tgif1/Jaspar

Match Rank:10
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------CTCTCATTACAA
NNNCAGCTGTCAATATN-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C C G A T T G A C C G T A G A C T C A G T C T G A A G T C C G T A C G T A
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C A C G T