Information for 4-GTGACAGGCTGT (Motif 4)

C T A G A C G T T A C G T C G A A T G C C G T A A T C G T C A G G A T C A C G T C T A G C A G T
Reverse Opposite:
G T C A A G T C C G T A C T A G A G T C T A G C C G A T A T C G A C G T A T G C T G C A G A T C
p-value:1e-15
log p-value:-3.626e+01
Information Content per bp:1.708
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif7.21%
Number of Background Sequences with motif626.7
Percentage of Background Sequences with motif1.31%
Average Position of motif in Targets116.2 +/- 56.3bp
Average Position of motif in Background102.3 +/- 62.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS2/MA0774.1/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GTGACAGGCTGT
TTGACAGC----
 C T A G A C G T T A C G T C G A A T G C C G T A A T C G T C A G G A T C A C G T C T A G C A G T
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GTGACAGGCTGT
TTGACAGG----
 C T A G A C G T T A C G T C G A A T G C C G T A A T C G T C A G G A T C A C G T C T A G C A G T
C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GTGACAGGCTGT
VBTGWCAGCB---
 A C G T C T A G A C G T T A C G T C G A A T G C C G T A A T C G T C A G G A T C A C G T C T A G C A G T
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T A C G T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GTGACAGGCTGT----
AGNACAGNCTGTTCTN
 C T A G A C G T T A C G T C G A A T G C C G T A A T C G T C A G G A T C A C G T C T A G C A G T A C G T A C G T A C G T A C G T
C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T

PH0141.1_Pknox2/Jaspar

Match Rank:5
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---GTGACAGGCTGT-
NNATTGACAGGTGCTT
 A C G T A C G T A C G T C T A G A C G T T A C G T C G A A T G C C G T A A T C G T C A G G A T C A C G T C T A G C A G T A C G T
T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GTGACAGGCTGT
TTGACAG-----
 C T A G A C G T T A C G T C G A A T G C C G T A A T C G T C A G G A T C A C G T C T A G C A G T
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GTGACAGGCTGT----
AGNACANNNTGTNCTN
 C T A G A C G T T A C G T C G A A T G C C G T A A T C G T C A G G A T C A C G T C T A G C A G T A C G T A C G T A C G T A C G T
C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GTGACAGGCTGT
AGGTGNCAGACAG-
 A C G T A C G T C T A G A C G T T A C G T C G A A T G C C G T A A T C G T C A G G A T C A C G T C T A G C A G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:9
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GTGACAGGCTGT----
-GVACAGNMTGTYCTB
 C T A G A C G T T A C G T C G A A T G C C G T A A T C G T C A G G A T C A C G T C T A G C A G T A C G T A C G T A C G T A C G T
A C G T C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G

PBX3/MA1114.1/Jaspar

Match Rank:10
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------GTGACAGGCTGT
GGGTGAGTGACAGGCGG-
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C G T T A C G T C G A A T G C C G T A A T C G T C A G G A T C A C G T C T A G C A G T
T A C G A C T G A C T G C G A T T C A G C G T A A C T G C A G T T A C G C T G A T A G C C T G A A C T G T A C G A T G C T C A G A T C G A C G T