Information for 4-TGTGCCAAAC (Motif 7)

G C A T A C T G C G A T C A T G A G T C G T A C T G C A G T C A C G T A G T A C
Reverse Opposite:
C A T G G C A T A C G T A C G T C A T G T C A G G T A C G C T A T G A C C G T A
p-value:1e-12
log p-value:-2.835e+01
Information Content per bp:1.651
Number of Target Sequences with motif103.0
Percentage of Target Sequences with motif20.08%
Number of Background Sequences with motif4566.8
Percentage of Background Sequences with motif9.56%
Average Position of motif in Targets102.6 +/- 54.5bp
Average Position of motif in Background99.4 +/- 65.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.79
Offset:0
Orientation:forward strand
Alignment:TGTGCCAAAC
GGTGCCAAGT
 G C A T A C T G C G A T C A T G A G T C G T A C T G C A G T C A C G T A G T A C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.76
Offset:0
Orientation:forward strand
Alignment:TGTGCCAAAC
CGTGCCAAG-
 G C A T A C T G C G A T C A T G A G T C G T A C T G C A G T C A C G T A G T A C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.72
Offset:1
Orientation:forward strand
Alignment:TGTGCCAAAC
-ATGCCAACC
 G C A T A C T G C G A T C A T G A G T C G T A C T G C A G T C A C G T A G T A C
A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.71
Offset:1
Orientation:forward strand
Alignment:TGTGCCAAAC
-TTGCCAAG-
 G C A T A C T G C G A T C A T G A G T C G T A C T G C A G T C A C G T A G T A C
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:5
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TGTGCCAAAC----
ACTATGCCAACCTACC
 A C G T A C G T G C A T A C T G C G A T C A T G A G T C G T A C T G C A G T C A C G T A G T A C A C G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

NFIC/MA0161.2/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TGTGCCAAAC-
NNTGCCAAGNN
 G C A T A C T G C G A T C A T G A G T C G T A C T G C A G T C A C G T A G T A C A C G T
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TGTGCCAAAC-
AGGTGHCAGACA
 A C G T G C A T A C T G C G A T C A T G A G T C G T A C T G C A G T C A C G T A G T A C A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TGTGCCAAAC
-ATGCCCACC
 G C A T A C T G C G A T C A T G A G T C G T A C T G C A G T C A C G T A G T A C
A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

PB0133.1_Hic1_2/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TGTGCCAAAC---
GGGTGTGCCCAAAAGG
 A C G T A C G T A C G T G C A T A C T G C G A T C A T G A G T C G T A C T G C A G T C A C G T A G T A C A C G T A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TGTGCCAAAC--
AGGTGNCAGACAG
 A C G T G C A T A C T G C G A T C A T G A G T C G T A C T G C A G T C A C G T A G T A C A C G T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G