Information for 5-TTGGCCYTCTKC (Motif 7)

C G A T A C G T C T A G A C T G A T G C A G T C A G C T A C G T A T G C A C G T A C G T A G T C
Reverse Opposite:
A C T G G T C A C G T A A T C G C G T A C T G A C T A G A T C G A G T C A G T C C G T A C G T A
p-value:1e-7
log p-value:-1.786e+01
Information Content per bp:1.866
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif4.88%
Number of Background Sequences with motif64.0
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets83.6 +/- 56.0bp
Average Position of motif in Background98.5 +/- 59.1bp
Strand Bias (log2 ratio + to - strand density)-2.6
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TTGGCCYTCTKC--
TTGGCATGGTGCCA
 C G A T A C G T C T A G A C T G A T G C A G T C A G C T A C G T A T G C A C G T A C G T A G T C A C G T A C G T
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TTGGCCYTCTKC---
CTTGGCANNNTGCCAA
 A C G T C G A T A C G T C T A G A C T G A T G C A G T C A G C T A C G T A T G C A C G T A C G T A G T C A C G T A C G T A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCCYTCTKC
NTTGGCANN----
 A C G T C G A T A C G T C T A G A C T G A T G C A G T C A G C T A C G T A T G C A C G T A C G T A G T C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TTGGCCYTCTKC
BNTGDCCTTG---
 A C G T C G A T A C G T C T A G A C T G A T G C A G T C A G C T A C G T A T G C A C G T A C G T A G T C
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCCYTCTKC
NNTTGGCANN----
 A C G T A C G T C G A T A C G T C T A G A C T G A T G C A G T C A G C T A C G T A T G C A C G T A C G T A G T C
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:6
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TTGGCCYTCTKC
CCGATTGGCT------
 A C G T A C G T A C G T A C G T C G A T A C G T C T A G A C T G A T G C A G T C A G C T A C G T A T G C A C G T A C G T A G T C
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TTGGCCYTCTKC--
CTGGCAGNCTGCCA
 C G A T A C G T C T A G A C T G A T G C A G T C A G C T A C G T A T G C A C G T A C G T A G T C A C G T A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

NFIC/MA0161.2/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TTGGCCYTCTKC
TACTTGGCAGA----
 A C G T A C G T A C G T C G A T A C G T C T A G A C T G A T G C A G T C A G C T A C G T A T G C A C G T A C G T A G T C
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TTGGCCYTCTKC
GGTTGGCAT-----
 A C G T A C G T C G A T A C G T C T A G A C T G A T G C A G T C A G C T A C G T A T G C A C G T A C G T A G T C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TTGGCCYTCTKC
TGATTGGCTANN---
 A C G T A C G T A C G T C G A T A C G T C T A G A C T G A T G C A G T C A G C T A C G T A T G C A C G T A C G T A G T C
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T A C G T A C G T