Information for 2-GCCAATTGAA (Motif 4)

A C T G G T A C A G T C G T C A G T C A A C G T C G A T C T A G C G T A C G T A
Reverse Opposite:
A C G T C G A T A G T C C G T A C G T A A C G T A C G T A C T G A C T G A G T C
p-value:1e-10
log p-value:-2.489e+01
Information Content per bp:1.849
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif4.63%
Number of Background Sequences with motif90.6
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets96.2 +/- 53.6bp
Average Position of motif in Background100.3 +/- 58.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0114.1_Nkx2-5/Jaspar

Match Rank:1
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---GCCAATTGAA---
TAAGCCACTTGAATTT
 A C G T A C G T A C G T A C T G G T A C A G T C G T C A G T C A A C G T C G A T C T A G C G T A C G T A A C G T A C G T A C G T
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

PH0171.1_Nkx2-1/Jaspar

Match Rank:2
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---GCCAATTGAA---
TAAGCCACTTGAAATT
 A C G T A C G T A C G T A C T G G T A C A G T C G T C A G T C A A C G T C G A T C T A G C G T A C G T A A C G T A C G T A C G T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

PH0111.1_Nkx2-2/Jaspar

Match Rank:3
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---GCCAATTGAA----
ATAACCACTTGAAAATT
 A C G T A C G T A C G T A C T G G T A C A G T C G T C A G T C A A C G T C G A T C T A G C G T A C G T A A C G T A C G T A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

PH0113.1_Nkx2-4/Jaspar

Match Rank:4
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---GCCAATTGAA---
TAAGCCACTTGAAATT
 A C G T A C G T A C G T A C T G G T A C A G T C G T C A G T C A A C G T C G A T C T A G C G T A C G T A A C G T A C G T A C G T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

NKX2-3/MA0672.1/Jaspar

Match Rank:5
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GCCAATTGAA
ACCACTTGAA
 A C T G G T A C A G T C G T C A G T C A A C G T C G A T C T A G C G T A C G T A
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

NKX2-8/MA0673.1/Jaspar

Match Rank:6
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GCCAATTGAA
-CCACTTGAA
 A C T G G T A C A G T C G T C A G T C A A C G T C G A T C T A G C G T A C G T A
A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

PH0115.1_Nkx2-6/Jaspar

Match Rank:7
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GCCAATTGAA---
TAAGCCACTTAACATT
 A C G T A C G T A C G T A C T G G T A C A G T C G T C A G T C A A C G T C G A T C T A G C G T A C G T A A C G T A C G T A C G T
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

Nkx2-5/MA0063.1/Jaspar

Match Rank:8
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GCCAATTGAA
--CAATTAA-
 A C T G G T A C A G T C G T C A G T C A A C G T C G A T C T A G C G T A C G T A
A C G T A C G T G T A C C G T A G T C A A C G T A C G T C T G A G C T A A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCCAATTGAA
AGCCAATCGG-
 A C G T A C T G G T A C A G T C G T C A G T C A A C G T C G A T C T A G C G T A C G T A
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCCAATTGAA
NGCAATTAAA
 A C T G G T A C A G T C G T C A G T C A A C G T C G A T C T A G C G T A C G T A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A