Information for 1-AATTGTTC (Motif 5)

G T C A G T C A A C G T G A C T A T C G A G C T C G A T A T G C
Reverse Opposite:
A T C G G C T A T C G A A T G C C T G A T G C A A C G T C A G T
p-value:1e-10
log p-value:-2.326e+01
Information Content per bp:1.783
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif17.13%
Number of Background Sequences with motif2464.8
Percentage of Background Sequences with motif5.04%
Average Position of motif in Targets116.1 +/- 59.2bp
Average Position of motif in Background97.4 +/- 65.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0173.1_Sox21_2/Jaspar

Match Rank:1
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----AATTGTTC-----
AATCAATTGTTCCGCTA
 A C G T A C G T A C G T A C G T G T C A G T C A A C G T G A C T A T C G A G C T C G A T A T G C A C G T A C G T A C G T A C G T A C G T
T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

PB0072.1_Sox5_1/Jaspar

Match Rank:2
Score:0.89
Offset:-4
Orientation:reverse strand
Alignment:----AATTGTTC----
NNTTTATTGTTCTNNN
 A C G T A C G T A C G T A C G T G T C A G T C A A C G T G A C T A T C G A G C T C G A T A T G C A C G T A C G T A C G T A C G T
G C T A C G A T G C A T G A C T G C A T C G T A G A C T G C A T C T A G G A C T A G C T G A T C G A C T G C T A C G T A G C T A

PB0063.1_Sox13_1/Jaspar

Match Rank:3
Score:0.87
Offset:-4
Orientation:reverse strand
Alignment:----AATTGTTC----
AANTTATTGTTCTNNA
 A C G T A C G T A C G T A C G T G T C A G T C A A C G T G A C T A T C G A G C T C G A T A T G C A C G T A C G T A C G T A C G T
C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A

PB0065.1_Sox15_1/Jaspar

Match Rank:4
Score:0.86
Offset:-5
Orientation:reverse strand
Alignment:-----AATTGTTC----
ANNTCTATTGTTCNNNA
 A C G T A C G T A C G T A C G T A C G T G T C A G T C A A C G T G A C T A T C G A G C T C G A T A T G C A C G T A C G T A C G T A C G T
C G T A C G T A T C G A A G C T G A T C G C A T C G T A C G A T C G A T C T A G C G A T G A C T G T A C G C T A G T A C G A C T C G T A

PB0062.1_Sox12_1/Jaspar

Match Rank:5
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-AATTGTTC-----
TAATTGTTCTAAAC
 A C G T G T C A G T C A A C G T G A C T A T C G A G C T C G A T A T G C A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

PB0074.1_Sox8_1/Jaspar

Match Rank:6
Score:0.83
Offset:-5
Orientation:forward strand
Alignment:-----AATTGTTC----
GTATCTATTGTTCTTTA
 A C G T A C G T A C G T A C G T A C G T G T C A G T C A A C G T G A C T A T C G A G C T C G A T A T G C A C G T A C G T A C G T A C G T
C A G T C A G T C G T A C G A T A G C T G C A T C G T A G A C T C G A T T C A G C G A T G A C T G T A C G C A T C A G T C G A T C G T A

PB0070.1_Sox30_1/Jaspar

Match Rank:7
Score:0.83
Offset:-5
Orientation:reverse strand
Alignment:-----AATTGTTC---
ANNTCCATTGTTCNNN
 A C G T A C G T A C G T A C G T A C G T G T C A G T C A A C G T G A C T A T C G A G C T C G A T A T G C A C G T A C G T A C G T
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

PB0183.1_Sry_2/Jaspar

Match Rank:8
Score:0.83
Offset:-4
Orientation:reverse strand
Alignment:----AATTGTTC-----
CNNNTATTGTTCNNNNN
 A C G T A C G T A C G T A C G T G T C A G T C A A C G T G A C T A T C G A G C T C G A T A T G C A C G T A C G T A C G T A C G T A C G T
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

PB0165.1_Sox11_2/Jaspar

Match Rank:9
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--AATTGTTC----
AAAATTGTTATGAA
 A C G T A C G T G T C A G T C A A C G T G A C T A T C G A G C T C G A T A T G C A C G T A C G T A C G T A C G T
C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A

PB0067.1_Sox18_1/Jaspar

Match Rank:10
Score:0.83
Offset:-3
Orientation:forward strand
Alignment:---AATTGTTC-----
TTCAATTGTTCTAAAA
 A C G T A C G T A C G T G T C A G T C A A C G T G A C T A T C G A G C T C G A T A T G C A C G T A C G T A C G T A C G T A C G T
A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A