Information for 18-TCTGYGSTGTCT (Motif 27)

A C G T A G T C A C G T A C T G A G C T A T C G A T G C A C G T A T C G A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A A T G C C G T A A T C G A T G C C T G A A G T C C G T A A C T G G T C A
p-value:1e-4
log p-value:-1.077e+01
Information Content per bp:1.867
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif39.5
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets122.6 +/- 49.4bp
Average Position of motif in Background89.8 +/- 80.1bp
Strand Bias (log2 ratio + to - strand density)3.6
Multiplicity (# of sites on avg that occur together)4.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TCTGYGSTGTCT
GCTGTGGTTT--
 A C G T A G T C A C G T A C T G A G C T A T C G A T G C A C G T A T C G A C G T A G T C A C G T
A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TCTGYGSTGTCT
GTCTGTGGTTT--
 A C G T A C G T A G T C A C G T A C T G A G C T A T C G A T G C A C G T A T C G A C G T A G T C A C G T
A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TCTGYGSTGTCT-------
--NNTNNTGTCTGGNNTNG
 A C G T A G T C A C G T A C T G A G C T A T C G A T G C A C G T A T C G A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TCTGYGSTGTCT--
GYCTGGYYTNTGTCA
 A C G T A C G T A G T C A C G T A C T G A G C T A T C G A T G C A C G T A T C G A C G T A G T C A C G T A C G T A C G T
A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TCTGYGSTGTCT
-CTGTGGTTTN-
 A C G T A G T C A C G T A C T G A G C T A T C G A T G C A C G T A T C G A C G T A G T C A C G T
A C G T G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.61
Offset:6
Orientation:forward strand
Alignment:TCTGYGSTGTCT--
------CTGTCTGG
 A C G T A G T C A C G T A C T G A G C T A T C G A T G C A C G T A T C G A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TCTGYGSTGTCT
NNHTGTGGTTWN-
 A C G T A C G T A G T C A C G T A C T G A G C T A T C G A T G C A C G T A T C G A C G T A G T C A C G T
C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.60
Offset:4
Orientation:forward strand
Alignment:TCTGYGSTGTCT--
----VBSYGTCTGG
 A C G T A G T C A C G T A C T G A G C T A T C G A T G C A C G T A T C G A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TCTGYGSTGTCT
GCTGTG------
 A C G T A G T C A C G T A C T G A G C T A T C G A T G C A C G T A T C G A C G T A G T C A C G T
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TCTGYGSTGTCT
NNTGTGGTTT--
 A C G T A G T C A C G T A C T G A G C T A T C G A T G C A C G T A T C G A C G T A G T C A C G T
A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T A C G T A C G T