Information for 23-CCATGGTCGG (Motif 31)

A G T C A G T C C G T A A C G T A C T G A C T G A C G T A G T C A C T G A C T G
Reverse Opposite:
A G T C A G T C A C T G C G T A A G T C A G T C C G T A A C G T A C T G A C T G
p-value:1e-2
log p-value:-6.523e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.30%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets74.0 +/- 39.7bp
Average Position of motif in Background145.8 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX13/MA1120.1/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCATGGTCGG
NNCCATTGTNN-
 A C G T A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T A G T C A C T G A C T G
C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCATGGTCGG
CCTTTGTT--
 A G T C A G T C C G T A A C G T A C T G A C T G A C G T A G T C A C T G A C T G
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCATGGTCGG
CTCATTGTC--
 A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T A G T C A C T G A C T G
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCATGGTCGG
CCATTGTTYB
 A G T C A G T C C G T A A C G T A C T G A C T G A C G T A G T C A C T G A C T G
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCATGGTCGG
NTCAAGGTCA-
 A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T A G T C A C T G A C T G
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCATGGTCGG
BTCAAGGTCA-
 A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T A G T C A C T G A C T G
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCATGGTCGG
CCWTTGTY--
 A G T C A G T C C G T A A C G T A C T G A C T G A C G T A G T C A C T G A C T G
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCATGGTCGG----
TATTCAAGGTCATGCGA
 A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T A G T C A C T G A C T G A C G T A C G T A C G T A C G T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCATGGTCGG
CAAAGGTCAG
 A G T C A G T C C G T A A C G T A C T G A C T G A C G T A G T C A C T G A C T G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCATGGTCGG
NCCATTGTTC-
 A C G T A G T C A G T C C G T A A C G T A C T G A C T G A C G T A G T C A C T G A C T G
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T