Information for 13-TGAAGGGAYTTT (Motif 13)

C G A T A C T G T C G A C T G A A C T G C T A G A T C G G T C A G A T C A C G T C G A T A G C T
Reverse Opposite:
C T G A G C T A C G T A C T A G C A G T A T G C A G T C A G T C A G C T A G C T A G T C G C T A
p-value:1e-10
log p-value:-2.529e+01
Information Content per bp:1.770
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif3.52%
Number of Background Sequences with motif261.5
Percentage of Background Sequences with motif0.54%
Average Position of motif in Targets88.2 +/- 53.8bp
Average Position of motif in Background99.7 +/- 57.0bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:TGAAGGGAYTTT--
----GGGAATTTCC
 C G A T A C T G T C G A C T G A A C T G C T A G A T C G G T C A G A T C A C G T C G A T A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

PH0129.1_Otx1/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGAAGGGAYTTT-----
AGAGGGGATTAATTTAT
 C G A T A C T G T C G A C T G A A C T G C T A G A T C G G T C A G A T C A C G T C G A T A G C T A C G T A C G T A C G T A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

PH0137.1_Pitx1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGAAGGGAYTTT----
TTAGAGGGATTAACAAT
 A C G T C G A T A C T G T C G A C T G A A C T G C T A G A T C G G T C A G A T C A C G T C G A T A G C T A C G T A C G T A C G T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

PH0130.1_Otx2/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TGAAGGGAYTTT-----
TGTAGGGATTAATTGTC
 C G A T A C T G T C G A C T G A A C T G C T A G A T C G G T C A G A T C A C G T C G A T A G C T A C G T A C G T A C G T A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

PH0124.1_Obox5_1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TGAAGGGAYTTT-----
TAGAGGGATTAAATTTC
 C G A T A C T G T C G A C T G A A C T G C T A G A T C G G T C A G A T C A C G T C G A T A G C T A C G T A C G T A C G T A C G T A C G T
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

PB0134.1_Hnf4a_2/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGAAGGGAYTTT----
NNATTGGACTTTNGNN
 C G A T A C T G T C G A C T G A A C T G C T A G A T C G G T C A G A T C A C G T C G A T A G C T A C G T A C G T A C G T A C G T
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

PH0121.1_Obox1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGAAGGGAYTTT----
TTAAGGGGATTAACTAC
 A C G T C G A T A C T G T C G A C T G A A C T G C T A G A T C G G T C A G A T C A C G T C G A T A G C T A C G T A C G T A C G T A C G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C

PH0138.1_Pitx2/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TGAAGGGAYTTT-----
TGAAGGGATTAATCATC
 C G A T A C T G T C G A C T G A A C T G C T A G A T C G G T C A G A T C A C G T C G A T A G C T A C G T A C G T A C G T A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

PH0125.1_Obox5_2/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGAAGGGAYTTT-----
NANAGGGATTAATTATN
 C G A T A C T G T C G A C T G A A C T G C T A G A T C G G T C A G A T C A C G T C G A T A G C T A C G T A C G T A C G T A C G T A C G T
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

RELA/MA0107.1/Jaspar

Match Rank:10
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TGAAGGGAYTTT--
----GGGAATTTCC
 C G A T A C T G T C G A C T G A A C T G C T A G A T C G G T C A G A T C A C G T C G A T A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C