Information for 15-ATAAATCGCC (Motif 24)

C G T A A C G T C G T A C G T A C G T A A C G T T A G C T C A G T A G C A G T C
Reverse Opposite:
A C T G A C T G A G T C A T C G C G T A A C G T A C G T A C G T C G T A A C G T
p-value:1e-7
log p-value:-1.815e+01
Information Content per bp:1.872
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.60%
Number of Background Sequences with motif62.9
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets92.4 +/- 59.6bp
Average Position of motif in Background100.2 +/- 62.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----ATAAATCGCC
GGCCATAAATCAC-
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T T A G C T C A G T A G C A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----ATAAATCGCC
GGCCATAAATCA--
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T T A G C T C A G T A G C A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:3
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---ATAAATCGCC
GCCATAAATCA--
 A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T T A G C T C A G T A G C A G T C
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----ATAAATCGCC
NGYCATAAAWCH--
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T T A G C T C A G T A G C A G T C
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---ATAAATCGCC
NCYATMAATCAY-
 A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T T A G C T C A G T A G C A G T C
T A C G G A T C G A T C C T G A A G C T G T C A G C T A T C G A C G A T G A T C G C T A G A C T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:6
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--ATAAATCGCC---
GTATAAAAGGCGGGG
 A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T T A G C T C A G T A G C A G T C A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:7
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--ATAAATCGCC---
GTATAAAAGGCGGGG
 A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T T A G C T C A G T A G C A G T C A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

CDX1/MA0878.1/Jaspar

Match Rank:8
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---ATAAATCGCC
GCAATAAAA----
 A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T T A G C T C A G T A G C A G T C
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---ATAAATCGCC
GTCATAAAAN---
 A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T T A G C T C A G T A G C A G T C
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:10
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ATAAATCGCC--
GAAGATCAATCACTAA
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A C G T A A C G T T A G C T C A G T A G C A G T C A C G T A C G T
T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A