Information for 1-HYTTGGMH (Motif 3)

G C A T A G C T G A C T A C G T A T C G A C T G G T C A G A C T
Reverse Opposite:
C T G A A C G T G T A C A T G C C G T A C T G A C T G A C G T A
p-value:1e-21
log p-value:-4.948e+01
Information Content per bp:1.685
Number of Target Sequences with motif394.0
Percentage of Target Sequences with motif63.04%
Number of Background Sequences with motif21276.5
Percentage of Background Sequences with motif43.80%
Average Position of motif in Targets97.0 +/- 53.2bp
Average Position of motif in Background100.2 +/- 61.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.59
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:HYTTGGMH--
-NTTGGCANN
 G C A T A G C T G A C T A C G T A T C G A C T G G T C A G A C T A C G T A C G T
A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIC/MA0161.2/Jaspar

Match Rank:2
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-HYTTGGMH--
TACTTGGCAGA
 A C G T G C A T A G C T G A C T A C G T A T C G A C T G G T C A G A C T A C G T A C G T
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:HYTTGGMH--
NNTTGGCANN
 G C A T A G C T G A C T A C G T A T C G A C T G G T C A G A C T A C G T A C G T
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-HYTTGGMH-
GGTCTGGCAT
 A C G T G C A T A G C T G A C T A C G T A T C G A C T G G T C A G A C T A C G T
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:HYTTGGMH-
-CTTGGCAA
 G C A T A G C T G A C T A C G T A T C G A C T G G T C A G A C T A C G T
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-HYTTGGMH---
TGATTGGCTANN
 A C G T G C A T A G C T G A C T A C G T A T C G A C T G G T C A G A C T A C G T A C G T A C G T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.68
Offset:-8
Orientation:forward strand
Alignment:--------HYTTGGMH
NNTGTTTATTTTGGCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A G C T G A C T A C G T A T C G A C T G G T C A G A C T
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A

ZNF354C/MA0130.1/Jaspar

Match Rank:8
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:HYTTGGMH
--GTGGAT
 G C A T A G C T G A C T A C G T A T C G A C T G G T C A G A C T
A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--HYTTGGMH
CCGATTGGCT
 A C G T A C G T G C A T A G C T G A C T A C G T A T C G A C T G G T C A G A C T
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

NFATC2/MA0152.1/Jaspar

Match Rank:10
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:HYTTGGMH--
---TGGAAAA
 G C A T A G C T G A C T A C G T A T C G A C T G G T C A G A C T A C G T A C G T
A C G T A C G T A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A