Information for 5-TTCAGCACCGCG (Motif 4)

A C G T A G C T A G T C C G T A A C T G A G T C C G T A A G T C A G T C A C T G A G T C A C T G
Reverse Opposite:
A G T C C T A G A G T C A C T G A C T G A C G T A C T G A G T C A C G T A C T G C T G A C G T A
p-value:1e-13
log p-value:-3.121e+01
Information Content per bp:1.900
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.28%
Number of Background Sequences with motif6.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets83.1 +/- 42.6bp
Average Position of motif in Background65.2 +/- 57.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TTCAGCACCGCG---------
TTCAGCACCATGGACAGCGCC
 A C G T A G C T A G T C C G T A A C T G A G T C C G T A A G T C A G T C A C T G A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TTCAGCACCGCG---------
-TCAGCACCATGGACAGCTCC
 A C G T A G C T A G T C C G T A A C T G A G T C C G T A A G T C A G T C A C T G A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TTCAGCACCGCG
SCTGTCARCACC---
 A C G T A C G T A C G T A C G T A G C T A G T C C G T A A C T G A G T C C G T A A G T C A G T C A C T G A G T C A C T G
T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C A C G T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TTCAGCACCGCG
TGAGTCAGCA-----
 A C G T A C G T A C G T A C G T A G C T A G T C C G T A A C T G A G T C C G T A A G T C A G T C A C T G A G T C A C T G
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TTCAGCACCGCG
GTCAGCANNTN-
 A C G T A G C T A G T C C G T A A C T G A G T C C G T A A G T C A G T C A C T G A G T C A C T G
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TTCAGCACCGCG
TTTCATTRCC---
 A C G T A C G T A G C T A G T C C G T A A C T G A G T C C G T A A G T C A G T C A C T G A G T C A C T G
G A C T A G C T G A C T A T G C G C T A A C G T A C G T C T G A A T G C G A T C A C G T A C G T A C G T

Mafb/MA0117.2/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TTCAGCACCGCG
NGTCAGCANTTT-
 A C G T A C G T A G C T A G T C C G T A A C T G A G T C C G T A A G T C A G T C A C T G A G T C A C T G
G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TTCAGCACCGCG
--CAGCC-----
 A C G T A G C T A G T C C G T A A C T G A G T C C G T A A G T C A G T C A C T G A G T C A C T G
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TTCAGCACCGCG
NTTTCATTRCHD--
 A C G T A C G T A C G T A G C T A G T C C G T A A C T G A G T C C G T A A G T C A G T C A C T G A G T C A C T G
C G A T G C A T A C G T C G A T A G T C C G T A A C G T A C G T C T A G A G T C G A C T C A G T A C G T A C G T

PB0041.1_Mafb_1/Jaspar

Match Rank:10
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----TTCAGCACCGCG
NCTANGTCAGCAAATTT
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C C G T A A C T G A G T C C G T A A G T C A G T C A C T G A G T C A C T G
C A G T G A T C A G C T C G T A G C T A T C A G A C G T G T A C C G T A C A T G G A T C C G T A G T C A C G T A G C A T G A C T C G A T