Information for 10-TTTACATGCTGG (Motif 9)

A G C T A C G T A C G T G T C A A G T C C G T A A C G T A C T G G T A C A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C T G G T A C C G T A C G A T A C T G A C G T C G T A C G T A C T G A
p-value:1e-12
log p-value:-2.782e+01
Information Content per bp:1.898
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets128.7 +/- 29.6bp
Average Position of motif in Background86.6 +/- 70.4bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0206.1_Zic2_2/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TTTACATGCTGG----
-TCNCCTGCTGNGNNN
 A G C T A C G T A C G T G T C A A G T C C G T A A C G T A C T G G T A C A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

POU5F1/MA1115.1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TTTACATGCTGG
NATTTGCATNN---
 A C G T A C G T A G C T A C G T A C G T G T C A A G T C C G T A A C G T A C T G G T A C A C G T A C T G A C T G
G T C A C G T A C G A T G A C T C G A T T C A G G A T C C T G A A G C T C G T A G C A T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.61
Offset:4
Orientation:forward strand
Alignment:TTTACATGCTGG--
----CCTGCTGAGH
 A G C T A C G T A C G T G T C A A G T C C G T A A C G T A C T G G T A C A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TTTACATGCTGG----
-TNTCCTGCTGTGNNG
 A G C T A C G T A C G T G T C A A G T C C G T A A C G T A C T G G T A C A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PH0085.1_Irx4/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TTTACATGCTGG--
NNTTTTACATGTANNNT
 A C G T A C G T A C G T A G C T A C G T A C G T G T C A A G T C C G T A A C G T A C T G G T A C A C G T A C T G A C T G A C G T A C G T
G C A T T A C G G C A T G C A T C A G T C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G A C T C G T A G C A T G C A T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TTTACATGCTGG
BTVATTWGCATA----
 A C G T A C G T A C G T A C G T A G C T A C G T A C G T G T C A A G T C C G T A A C G T A C T G G T A C A C G T A C T G A C T G
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T A C G T A C G T

Hmx1/MA0896.1/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TTTACATGCTGG-
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T A C G T A G C T A C G T A C G T G T C A A G T C C G T A A C G T A C T G G T A C A C G T A C T G A C T G A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TTTACATGCTGG-
ANNCATTAATTGCTNGN
 A C G T A C G T A C G T A C G T A G C T A C G T A C G T G T C A A G T C C G T A A C G T A C T G G T A C A C G T A C T G A C T G A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TTTACATGCTGG----
-NNTCCTGCTGTGNNN
 A G C T A C G T A C G T G T C A A G T C C G T A A C G T A C T G G T A C A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Hmx3/MA0898.1/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TTTACATGCTGG-
ATTNNTTAATTGCTTGT
 A C G T A C G T A C G T A C G T A G C T A C G T A C G T G T C A A G T C C G T A A C G T A C T G G T A C A C G T A C T G A C T G A C G T
G C T A G C A T A G C T A G T C C G A T G C A T G C A T C T G A C G T A C A G T G A C T C T A G G A T C A G C T A C G T T A C G A C G T