Information for 1-GCCCTCTAGTGG (Motif 1)

C A T G A G T C A G T C G T A C A G C T A G T C A C G T C T G A T C A G C G A T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A G T C A G C T C G T A A C T G C T G A A C T G A C T G A C T G G T A C
p-value:1e-20
log p-value:-4.664e+01
Information Content per bp:1.820
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif3.96%
Number of Background Sequences with motif264.6
Percentage of Background Sequences with motif0.55%
Average Position of motif in Targets109.7 +/- 49.1bp
Average Position of motif in Background85.8 +/- 58.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.90
Offset:-5
Orientation:forward strand
Alignment:-----GCCCTCTAGTGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T C A T G A G T C A G T C G T A C A G C T A G T C A C G T C T G A T C A G C G A T A C T G A C T G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.90
Offset:-4
Orientation:reverse strand
Alignment:----GCCCTCTAGTGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T C A T G A G T C A G T C G T A C A G C T A G T C A C G T C T G A T C A G C G A T A C T G A C T G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.89
Offset:-7
Orientation:forward strand
Alignment:-------GCCCTCTAGTGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G A G T C A G T C G T A C A G C T A G T C A C G T C T G A T C A G C G A T A C T G A C T G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCFL/MA1102.1/Jaspar

Match Rank:4
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---GCCCTCTAGTGG
NGTGCCCCCTGGNG-
 A C G T A C G T A C G T C A T G A G T C A G T C G T A C A G C T A G T C A C G T C T G A T C A G C G A T A C T G A C T G
T C A G T A C G A G C T C A T G T G A C A T G C T G A C A G T C A T G C A C G T T C A G A T C G A G C T A T C G A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCCCTCTAGTGG
GCCATCTGTT--
 C A T G A G T C A G T C G T A C A G C T A G T C A C G T C T G A T C A G C G A T A C T G A C T G
T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T

NEUROD1/MA1109.1/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCCCTCTAGTGG
NNNCCATCTGTNN-
 A C G T A C G T C A T G A G T C A G T C G T A C A G C T A G T C A C G T C T G A T C A G C G A T A C T G A C T G
A T G C A G C T T C A G T G A C G T A C C G T A A C G T T G A C G C A T A C T G A G C T A G T C G T A C A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCCCTCTAGTGG
ACCATCTGTT--
 C A T G A G T C A G T C G T A C A G C T A G T C A C G T C T G A T C A G C G A T A C T G A C T G
T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCCCTCTAGTGG-
-CCCCCTGCTGTG
 C A T G A G T C A G T C G T A C A G C T A G T C A C G T C T G A T C A G C G A T A C T G A C T G A C G T
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCCCTCTAGTGG--
GGCCYCCTGCTGDGH
 A C G T C A T G A G T C A G T C G T A C A G C T A G T C A C G T C T G A T C A G C G A T A C T G A C T G A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

TAL1::TCF3/MA0091.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCCCTCTAGTGG
CGACCATCTGTT--
 A C G T A C G T C A T G A G T C A G T C G T A C A G C T A G T C A C G T C T G A T C A G C G A T A C T G A C T G
G T A C T A C G C T G A G T A C A T G C C G T A A C G T G T A C A C G T A C T G A C G T G A C T A C G T A C G T