Information for 6-CGCCTAAT (Motif 16)

A T G C A C T G T G A C A G T C G C A T C G T A T G C A G A C T
Reverse Opposite:
C T G A A C G T A C G T C G T A A C T G A C T G T G A C T A C G
p-value:1e-9
log p-value:-2.097e+01
Information Content per bp:1.798
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif4.06%
Number of Background Sequences with motif629.4
Percentage of Background Sequences with motif1.31%
Average Position of motif in Targets103.5 +/- 58.2bp
Average Position of motif in Background96.6 +/- 57.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BARX1/MA0875.1/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CGCCTAAT---
---NTAATTGN
 A T G C A C T G T G A C A G T C G C A T C G T A T G C A G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C

PDX1/MA0132.2/Jaspar

Match Rank:2
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CGCCTAAT---
---CTAATTAN
 A T G C A C T G T G A C A G T C G C A T C G T A T G C A G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T G A A T G C

GSC/MA0648.1/Jaspar

Match Rank:3
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CGCCTAAT----
--GCTAATCCCC
 A T G C A C T G T G A C A G T C G C A T C G T A T G C A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

PH0089.1_Isx/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CGCCTAAT-------
ACNNCTAATTAGNNNN
 A C G T A T G C A C T G T G A C A G T C G C A T C G T A T G C A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

EMX1/MA0612.1/Jaspar

Match Rank:5
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CGCCTAAT----
--CCTAATTACC
 A T G C A C T G T G A C A G T C G C A T C G T A T G C A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T T G A C A G T C G A C T T C G A C G T A C G A T C A G T C T G A T A G C A G T C

HOXB3/MA0903.1/Jaspar

Match Rank:6
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CGCCTAAT----
--NNTAATTANN
 A T G C A C T G T G A C A G T C G C A T C G T A T G C A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C T G A G T C C G A T C T G A C T G A A G C T A C G T C T G A A T C G G A C T

EVX2/MA0888.1/Jaspar

Match Rank:7
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CGCCTAAT----
--NNTAATTANN
 A T G C A C T G T G A C A G T C G C A T C G T A T G C A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G A T G C G A C T T C G A T G C A A G C T A C G T C T G A A T G C A T G C

GSC2/MA0891.1/Jaspar

Match Rank:8
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CGCCTAAT----
--CCTAATCCGC
 A T G C A C T G T G A C A G T C G C A T C G T A T G C A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C

VENTX/MA0724.1/Jaspar

Match Rank:9
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CGCCTAAT----
---CTAATCGNT
 A T G C A C T G T G A C A G T C G C A T C G T A T G C A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T

BSX/MA0876.1/Jaspar

Match Rank:10
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CGCCTAAT---
---NTAATTGG
 A T G C A C T G T G A C A G T C G C A T C G T A T G C A G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G