Information for 11-AGTCAAGGSA (Motif 17)

C T G A C A T G A C G T A G T C C G T A G T C A C T A G A C T G T A C G T C G A
Reverse Opposite:
A G C T A T G C G T A C A G T C C A G T C G A T T C A G T G C A G T A C A G C T
p-value:1e-8
log p-value:-2.066e+01
Information Content per bp:1.683
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif4.97%
Number of Background Sequences with motif888.3
Percentage of Background Sequences with motif1.85%
Average Position of motif in Targets101.4 +/- 56.8bp
Average Position of motif in Background102.5 +/- 59.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax2/MA0067.1/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AGTCAAGGSA
AGTCACGC--
 C T G A C A T G A C G T A G T C C G T A G T C A C T A G A C T G T A C G T C G A
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGTCAAGGSA-
AGGTCAAGGTCA
 A C G T C T G A C A T G A C G T A G T C C G T A G T C A C T A G A C T G T A C G T C G A A C G T
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AGTCAAGGSA-
AGGTCAAGGTCA
 A C G T C T G A C A T G A C G T A G T C C G T A G T C A C T A G A C T G T A C G T C G A A C G T
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

Nr2e1/MA0676.1/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGTCAAGGSA
AAAAGTCAA----
 A C G T A C G T A C G T C T G A C A T G A C G T A G T C C G T A G T C A C T A G A C T G T A C G T C G A
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGTCAAGGSA
AAGGCAAGTGT
 A C G T C T G A C A T G A C G T A G T C C G T A G T C A C T A G A C T G T A C G T C G A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AGTCAAGGSA-
-NTCAAGGTCA
 C T G A C A T G A C G T A G T C C G T A G T C A C T A G A C T G T A C G T C G A A C G T
A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGTCAAGGSA-
-BTCAAGGTCA
 C T G A C A T G A C G T A G T C C G T A G T C A C T A G A C T G T A C G T C G A A C G T
A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGTCAAGGSA-
BRGTCACGTGAC
 A C G T C T G A C A T G A C G T A G T C C G T A G T C A C T A G A C T G T A C G T C G A A C G T
A C T G C T A G T C A G A G C T T A G C G T C A A G T C T C A G G C A T T A C G T C G A A G T C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AGTCAAGGSA---
---CAAGGHCANV
 C T G A C A T G A C G T A G T C C G T A G T C A C T A G A C T G T A C G T C G A A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

BHLHE41/MA0636.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGTCAAGGSA-
-GTCACGTGAC
 C T G A C A T G A C G T A G T C C G T A G T C A C T A G A C T G T A C G T C G A A C G T
A C G T T C A G C A G T A G T C C G T A A G T C C T A G A G C T A T C G G T C A A G T C