Information for 1-CGAGCCAA (Motif 3)

T G A C A T C G C T G A A C T G A T G C G T A C T C G A C T G A
Reverse Opposite:
G A C T A G C T A C T G T A C G A G T C A G C T T A G C A C T G
p-value:1e-16
log p-value:-3.879e+01
Information Content per bp:1.802
Number of Target Sequences with motif221.0
Percentage of Target Sequences with motif22.41%
Number of Background Sequences with motif6077.6
Percentage of Background Sequences with motif12.62%
Average Position of motif in Targets102.1 +/- 57.1bp
Average Position of motif in Background97.9 +/- 62.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.81
Offset:0
Orientation:forward strand
Alignment:CGAGCCAA-
CGTGCCAAG
 T G A C A T C G C T G A A C T G A T G C G T A C T C G A C T G A A C G T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CGAGCCAA--
GGTGCCAAGT
 T G A C A T C G C T G A A C T G A T G C G T A C T C G A C T G A A C G T A C G T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.73
Offset:2
Orientation:forward strand
Alignment:CGAGCCAA----
--AGCCAATCGG
 T G A C A T C G C T G A A C T G A T G C G T A C T C G A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CGAGCCAA---
ACTAGCCAATCA
 A C G T T G A C A T C G C T G A A C T G A T G C G T A C T C G A C T G A A C G T A C G T A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CGAGCCAA
-CAGCC--
 T G A C A T C G C T G A A C T G A T G C G T A C T C G A C T G A
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CGAGCCAA---
NNTGCCAAGNN
 T G A C A T C G C T G A A C T G A T G C G T A C T C G A C T G A A C G T A C G T A C G T
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CGAGCCAA
BCAGACWA
 T G A C A T C G C T G A A C T G A T G C G T A C T C G A C T G A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

NFYB/MA0502.1/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CGAGCCAA----
AAATGGACCAATCAG
 A C G T A C G T A C G T T G A C A T C G C T G A A C T G A T G C G T A C T C G A C T G A A C G T A C G T A C G T A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

PB0112.1_E2F2_2/Jaspar

Match Rank:9
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CGAGCCAA----
CCTTCGGCGCCAAAAGG
 A C G T A C G T A C G T A C G T A C G T T G A C A T C G C T G A A C T G A T G C G T A C T C G A C T G A A C G T A C G T A C G T A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CGAGCCAA--
-ATGCCAACC
 T G A C A T C G C T G A A C T G A T G C G T A C T C G A C T G A A C G T A C G T
A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C