Information for 19-TGCATGMGTGCC (Motif 32)

A C G T A C T G A G T C C T G A A C G T A C T G G T A C A C T G A C G T A C T G A G T C A T G C
Reverse Opposite:
T A C G A C T G A G T C C G T A G T A C C A T G A G T C C G T A A G C T A C T G A G T C C G T A
p-value:1e-3
log p-value:-8.900e+00
Information Content per bp:1.900
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif37.0
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets82.7 +/- 44.7bp
Average Position of motif in Background105.9 +/- 65.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TGCATGMGTGCC---
NNGCGTGTGTGCNGCN
 A C G T A C G T A C T G A G T C C T G A A C G T A C T G G T A C A C T G A C G T A C T G A G T C A T G C A C G T A C G T A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TGCATGMGTGCC
GTCATGCHTGRCTGS-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C T G A A C G T A C T G G T A C A C T G A C G T A C T G A G T C A T G C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TGCATGMGTGCC
TTGCGTGCVA---
 A C G T A C G T A C T G A G T C C T G A A C G T A C T G G T A C A C T G A C G T A C T G A G T C A T G C
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TGCATGMGTGCC-
--CTTGAGTGGCT
 A C G T A C T G A G T C C T G A A C G T A C T G G T A C A C T G A C G T A C T G A G T C A T G C A C G T
A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

POU5F1/MA1115.1/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TGCATGMGTGCC
NATTTGCATNN-----
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C T G A A C G T A C T G G T A C A C T G A C G T A C T G A G T C A T G C
G T C A C G T A C G A T G A C T C G A T T C A G G A T C C T G A A G C T C G T A G C A T A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TGCATGMGTGCC
NGTCACGCTTGGCTGC-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C T G A A C G T A C T G G T A C A C T G A C G T A C T G A G T C A T G C
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C A C G T

ZNF24/MA1124.1/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TGCATGMGTGCC
GAATGAATGAATG--
 A C G T A C G T A C G T A C G T A C T G A G T C C T G A A C G T A C T G G T A C A C T G A C G T A C T G A G T C A T G C
C T A G T C G A C T G A A G C T C T A G C T G A T C G A A G C T C T A G T C G A C T G A A G C T C T A G A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:8
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TGCATGMGTGCC
----TGCGTG--
 A C G T A C T G A G T C C T G A A C G T A C T G G T A C A C T G A C G T A C T G A G T C A T G C
A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGCATGMGTGCC-
CTGGCAGNCTGCCA
 A C G T A C G T A C T G A G T C C T G A A C G T A C T G G T A C A C T G A C G T A C T G A G T C A T G C A C G T
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

PAX9/MA0781.1/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----TGCATGMGTGCC
CGTCACGCATGACTGCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C T G A A C G T A C T G G T A C A C T G A C G T A C T G A G T C A T G C
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A