Information for 9-AGTCACGC (Motif 14)

C T G A C T A G A G C T T A G C G C T A A T G C A T C G A G T C
Reverse Opposite:
T C A G T A G C T A C G C G A T A T C G T C G A G A T C G A C T
p-value:1e-16
log p-value:-3.833e+01
Information Content per bp:1.598
Number of Target Sequences with motif1212.0
Percentage of Target Sequences with motif26.34%
Number of Background Sequences with motif9452.9
Percentage of Background Sequences with motif21.14%
Average Position of motif in Targets100.6 +/- 56.6bp
Average Position of motif in Background98.6 +/- 60.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5/MA0014.3/Jaspar

Match Rank:1
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--AGTCACGC--
NNGGTCACGCTC
 A C G T A C G T C T G A C T A G A G C T T A G C G C T A A T G C A T C G A G T C A C G T A C G T
T C A G C A T G T C A G A T C G G A C T A T G C C G T A A G T C T C A G A T G C G A C T A G T C

Pax2/MA0067.1/Jaspar

Match Rank:2
Score:0.80
Offset:0
Orientation:forward strand
Alignment:AGTCACGC
AGTCACGC
 C T G A C T A G A G C T T A G C G C T A A T G C A T C G A G T C
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:3
Score:0.79
Offset:3
Orientation:reverse strand
Alignment:AGTCACGC-
---CACGCA
 C T G A C T A G A G C T T A G C G C T A A T G C A T C G A G T C A C G T
A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.74
Offset:0
Orientation:forward strand
Alignment:AGTCACGC--
TBGCACGCAA
 C T G A C T A G A G C T T A G C G C T A A T G C A T C G A G T C A C G T A C G T
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AGTCACGC-------
-GTCACGCTCNCTGA
 C T G A C T A G A G C T T A G C G C T A A T G C A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

PB0180.1_Sp4_2/Jaspar

Match Rank:6
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--AGTCACGC-----
NNGGCCACGCCTTTN
 A C G T A C G T C T G A C T A G A G C T T A G C G C T A A T G C A T C G A G T C A C G T A C G T A C G T A C G T A C G T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGTCACGC---
CNGTCACGCCAC
 A C G T C T G A C T A G A G C T T A G C G C T A A T G C A T C G A G T C A C G T A C G T A C G T
G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C

Arntl/MA0603.1/Jaspar

Match Rank:8
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AGTCACGC--
GGTCACGTGC
 C T G A C T A G A G C T T A G C G C T A A T G C A T C G A G T C A C G T A C G T
C A T G T C A G C A G T G T A C G C T A A G T C C T A G G A C T C A T G G A T C

PB0147.1_Max_2/Jaspar

Match Rank:9
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGTCACGC-----
GTGCCACGCGACTG
 A C G T C T G A C T A G A G C T T A G C G C T A A T G C A T C G A G T C A C G T A C G T A C G T A C G T A C G T
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G

PAX1/MA0779.1/Jaspar

Match Rank:10
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AGTCACGC---------
CGTCACGCATGACTGCA
 C T G A C T A G A G C T T A G C G C T A A T G C A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A