Information for 12-CGHAMANT (Motif 19)

A G T C C T A G G A C T C T G A G T A C C T G A G A C T G C A T
Reverse Opposite:
C G T A C T G A A G C T C A T G A G C T C T G A A G T C A C T G
p-value:1e-11
log p-value:-2.722e+01
Information Content per bp:1.647
Number of Target Sequences with motif482.0
Percentage of Target Sequences with motif10.47%
Number of Background Sequences with motif3398.5
Percentage of Background Sequences with motif7.60%
Average Position of motif in Targets96.0 +/- 59.1bp
Average Position of motif in Background100.0 +/- 61.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0075.1_Sp100_1/Jaspar

Match Rank:1
Score:0.73
Offset:-6
Orientation:forward strand
Alignment:------CGHAMANT
ATTTTACGGAAAAT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C T A G G A C T C T G A G T A C C T G A G A C T G C A T
C T G A C G A T C G A T G C A T G A C T G T C A A T G C A T C G A C T G G C T A C G T A G C T A G C T A C A G T

PH0077.1_Hoxd12/Jaspar

Match Rank:2
Score:0.72
Offset:-6
Orientation:forward strand
Alignment:------CGHAMANT---
CAAGGTCGTAAAATCTT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C T A G G A C T C T G A G T A C C T G A G A C T G C A T A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------CGHAMANT--
AAACCTCGTAAAATTT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C T A G G A C T C T G A G T A C C T G A G A C T G C A T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

PH0067.1_Hoxc12/Jaspar

Match Rank:4
Score:0.69
Offset:-6
Orientation:forward strand
Alignment:------CGHAMANT---
TTAGGTCGTAAAATTTC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C T A G G A C T C T G A G T A C C T G A G A C T G C A T A C G T A C G T A C G T
G A C T G C A T T C G A T C A G T C A G A G C T G T A C C T A G A C G T G C T A C G T A G C T A G C T A G C A T A G C T C G A T G A T C

HOXC12/MA0906.1/Jaspar

Match Rank:5
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CGHAMANT
GGTCGTAAAAA
 A C G T A C G T A C G T A G T C C T A G G A C T C T G A G T A C C T G A G A C T G C A T
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

HOXD12/MA0873.1/Jaspar

Match Rank:6
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CGHAMANT
AGTCGTAAAAA
 A C G T A C G T A C G T A G T C C T A G G A C T C T G A G T A C C T G A G A C T G C A T
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

PH0076.1_Hoxd11/Jaspar

Match Rank:7
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------CGHAMANT---
TAAGGTCGTAAAATCCT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C T A G G A C T C T G A G T A C C T G A G A C T G C A T A C G T A C G T A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T

HOXC11/MA0651.1/Jaspar

Match Rank:8
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CGHAMANT
GGTCGTAAAAT
 A C G T A C G T A C G T A G T C C T A G G A C T C T G A G T A C C T G A G A C T G C A T
C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

PH0065.1_Hoxc10/Jaspar

Match Rank:9
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------CGHAMANT--
TAAAGTCGTAAAACGT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C T A G G A C T C T G A G T A C C T G A G A C T G C A T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

PH0066.1_Hoxc11/Jaspar

Match Rank:10
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------CGHAMANT--
TAAAGTCGTAAAATAG
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C T A G G A C T C T G A G T A C C T G A G A C T G C A T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G