Information for 1-GRGCCAAG (Motif 2)

C T A G C T G A A C T G A G T C A G T C C G T A C G T A C T A G
Reverse Opposite:
G A T C A C G T A C G T A C T G A C T G G T A C G A C T G A T C
p-value:1e-40
log p-value:-9.251e+01
Information Content per bp:1.788
Number of Target Sequences with motif1814.0
Percentage of Target Sequences with motif39.42%
Number of Background Sequences with motif13488.9
Percentage of Background Sequences with motif30.16%
Average Position of motif in Targets98.8 +/- 55.8bp
Average Position of motif in Background99.0 +/- 61.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-GRGCCAAG
CGTGCCAAG
 A C G T C T A G C T G A A C T G A G T C A G T C C G T A C G T A C T A G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-GRGCCAAG-
GGTGCCAAGT
 A C G T C T A G C T G A A C T G A G T C A G T C C G T A C G T A C T A G A C G T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIC/MA0161.2/Jaspar

Match Rank:3
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-GRGCCAAG--
NNTGCCAAGNN
 A C G T C T A G C T G A A C T G A G T C A G T C C G T A C G T A C T A G A C G T A C G T
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

NFY(CCAAT)/Promoter/Homer

Match Rank:4
Score:0.76
Offset:1
Orientation:forward strand
Alignment:GRGCCAAG---
-AGCCAATCGG
 C T A G C T G A A C T G A G T C A G T C C G T A C G T A C T A G A C G T A C G T A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--GRGCCAAG--
ACTAGCCAATCA
 A C G T A C G T C T A G C T G A A C T G A G T C A G T C C G T A C G T A C T A G A C G T A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GRGCCAAG
TTGCCAAG
 C T A G C T G A A C T G A G T C A G T C C G T A C G T A C T A G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GRGCCAAG-
ATGCCAACC
 C T A G C T G A A C T G A G T C A G T C C G T A C G T A C T A G A C G T
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GRGCCAAG---------
-TGCCAAAATAAACANN
 C T A G C T G A A C T G A G T C A G T C C G T A C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

NFYB/MA0502.1/Jaspar

Match Rank:9
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GRGCCAAG---
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T C T A G C T G A A C T G A G T C A G T C C G T A C G T A C T A G A C G T A C G T A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

PB0112.1_E2F2_2/Jaspar

Match Rank:10
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------GRGCCAAG---
CCTTCGGCGCCAAAAGG
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G C T G A A C T G A G T C A G T C C G T A C G T A C T A G A C G T A C G T A C G T
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G