Information for 20-GCTCATAAAG (Motif 24)

A T C G A G T C A C G T A G T C C T G A C G A T C G T A C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A C G T C G T A A G C T A C T G C G T A A C T G A T G C
p-value:1e-9
log p-value:-2.184e+01
Information Content per bp:1.905
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif0.39%
Number of Background Sequences with motif25.6
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets87.1 +/- 67.2bp
Average Position of motif in Background79.6 +/- 58.0bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---GCTCATAAAG---
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T A T C G A G T C A C G T A G T C C T G A C G A T C G T A C G T A C G T A A C T G A C G T A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:2
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GCTCATAAAG-
GCTCGTAAAAA
 A T C G A G T C A C G T A G T C C T G A C G A T C G T A C G T A C G T A A C T G A C G T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---GCTCATAAAG---
AAACCTCGTAAAATTT
 A C G T A C G T A C G T A T C G A G T C A C G T A G T C C T G A C G A T C G T A C G T A C G T A A C T G A C G T A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

Hoxa11/MA0911.1/Jaspar

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GCTCATAAAG--
GGTCGTAAAATT
 A T C G A G T C A C G T A G T C C T G A C G A T C G T A C G T A C G T A A C T G A C G T A C G T
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

HOXC10/MA0905.1/Jaspar

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GCTCATAAAG-
-GTCGTAAAAT
 A T C G A G T C A C G T A G T C C T G A C G A T C G T A C G T A C G T A A C T G A C G T
A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

HOXC11/MA0651.1/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCTCATAAAG-
GGTCGTAAAAT
 A T C G A G T C A C G T A G T C C T G A C G A T C G T A C G T A C G T A A C T G A C G T
C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

HOXD12/MA0873.1/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCTCATAAAG-
AGTCGTAAAAA
 A T C G A G T C A C G T A G T C C T G A C G A T C G T A C G T A C G T A A C T G A C G T
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

HOXC12/MA0906.1/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCTCATAAAG-
GGTCGTAAAAA
 A T C G A G T C A C G T A G T C C T G A C G A T C G T A C G T A C G T A A C T G A C G T
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCTCATAAAG--
NGYCATAAAWCH
 A T C G A G T C A C G T A G T C C T G A C G A T C G T A C G T A C G T A A C T G A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

HOXD11/MA0908.1/Jaspar

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCTCATAAAG-
-GTCGTAAAAA
 A T C G A G T C A C G T A G T C C T G A C G A T C G T A C G T A C G T A A C T G A C G T
A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A