Information for 4-GGCTGTCTGCCA (Motif 8)

A C T G A C T G T A G C C G A T A C T G A C G T A G T C C G A T A T C G A T G C T A G C T G C A
Reverse Opposite:
A C G T A T C G T A C G T A G C G C T A T C A G T G C A T G A C G C T A A T C G T G A C G T A C
p-value:1e-24
log p-value:-5.542e+01
Information Content per bp:1.695
Number of Target Sequences with motif125.0
Percentage of Target Sequences with motif2.72%
Number of Background Sequences with motif416.2
Percentage of Background Sequences with motif0.93%
Average Position of motif in Targets97.0 +/- 55.1bp
Average Position of motif in Background100.8 +/- 57.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-GGCTGTCTGCCA-
TGGCAGNCTGCCAG
 A C G T A C T G A C T G T A G C C G A T A C T G A C G T A G T C C G A T A T C G A T G C T A G C T G C A A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---GGCTGTCTGCCA-
CTTGGCANNNTGCCAA
 A C G T A C G T A C G T A C T G A C T G T A G C C G A T A C T G A C G T A G T C C G A T A T C G A T G C T A G C T G C A A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GGCTGTCTGCCA---
--CTGTCTGTCACCT
 A C T G A C T G T A G C C G A T A C T G A C G T A G T C C G A T A T C G A T G C T A G C T G C A A C G T A C G T A C G T
A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:4
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GGCTGTCTGCCA
TTGGCATGGTGCCA
 A C G T A C G T A C T G A C T G T A G C C G A T A C T G A C G T A G T C C G A T A T C G A T G C T A G C T G C A
G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:GGCTGTCTGCCA---
---TGTCTGDCACCT
 A C T G A C T G T A G C C G A T A C T G A C G T A G T C C G A T A T C G A T G C T A G C T G C A A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GGCTGTCTGCCA
VBSYGTCTGG--
 A C T G A C T G T A G C C G A T A C T G A C G T A G T C C G A T A T C G A T G C T A G C T G C A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GGCTGTCTGCCA
--CTGTCTGG--
 A C T G A C T G T A G C C G A T A C T G A C G T A G T C C G A T A T C G A T G C T A G C T G C A
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGCTGTCTGCCA
GSCTGTCACTCA
 A C T G A C T G T A G C C G A T A C T G A C G T A G T C C G A T A T C G A T G C T A G C T G C A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.60
Offset:6
Orientation:forward strand
Alignment:GGCTGTCTGCCA--
------TTGCCAAG
 A C T G A C T G T A G C C G A T A C T G A C G T A G T C C G A T A T C G A T G C T A G C T G C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GGCTGTCTGCCA
--TWGTCTGV--
 A C T G A C T G T A G C C G A T A C T G A C G T A G T C C G A T A T C G A T G C T A G C T G C A
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T