Information for 6-GTGATTTATG (Motif 9)

T A C G C G A T C A T G C G T A C G A T C G A T C G A T C T G A C G A T A T C G
Reverse Opposite:
T A G C C G T A A G C T C G T A C G T A C G T A G C A T G T A C G C T A A T G C
p-value:1e-23
log p-value:-5.517e+01
Information Content per bp:1.672
Number of Target Sequences with motif100.0
Percentage of Target Sequences with motif2.17%
Number of Background Sequences with motif286.4
Percentage of Background Sequences with motif0.64%
Average Position of motif in Targets102.8 +/- 62.4bp
Average Position of motif in Background93.3 +/- 62.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:GTGATTTATG---
NTGATTTATGGCC
 T A C G C G A T C A T G C G T A C G A T C G A T C G A T C T G A C G A T A T C G A C G T A C G T A C G T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:GTGATTTATG--
-TGATTTATGGC
 T A C G C G A T C A T G C G T A C G A T C G A T C G A T C T G A C G A T A T C G A C G T A C G T
A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:GTGATTTATG---
-TGATTTATGGCC
 T A C G C G A T C A T G C G T A C G A T C G A T C G A T C T G A C G A T A T C G A C G T A C G T A C G T
A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer

Match Rank:4
Score:0.82
Offset:0
Orientation:forward strand
Alignment:GTGATTTATG--
RTGATTKATRGN
 T A C G C G A T C A T G C G T A C G A T C G A T C G A T C T G A C G A T A T C G A C G T A C G T
C T G A C G A T C T A G C G T A A G C T C G A T C A G T C T G A G A C T C T A G C T A G A T G C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:GTGATTTATG-
-TGATTGATGA
 T A C G C G A T C A T G C G T A C G A T C G A T C G A T C T G A C G A T A T C G A C G T
A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:GTGATTTATG---
-DGWTTTATGRCN
 T A C G C G A T C A T G C G T A C G A T C G A T C G A T C T G A C G A T A T C G A C G T A C G T A C G T
A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

Gfi1/MA0038.1/Jaspar

Match Rank:7
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--GTGATTTATG
CNGTGATTTN--
 A C G T A C G T T A C G C G A T C A T G C G T A C G A T C G A T C G A T C T G A C G A T A T C G
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:8
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GTGATTTATG---
-TGATTRATGGCY
 T A C G C G A T C A T G C G T A C G A T C G A T C G A T C T G A C G A T A T C G A C G T A C G T A C G T
A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:GTGATTTATG--
---TTTTATTGC
 T A C G C G A T C A T G C G T A C G A T C G A T C G A T C T G A C G A T A T C G A C G T A C G T
A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:10
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GTGATTTATG-
-TGATKGATGR
 T A C G C G A T C A T G C G T A C G A T C G A T C G A T C T G A C G A T A T C G A C G T
A C G T C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G