Information for 17-GGGCAGTAAA (Motif 18)

A C T G A C T G A C T G A T G C C G T A A C T G A C G T C G T A G T C A C G T A
Reverse Opposite:
A C G T A C G T A C G T C G T A A G T C A C G T A T C G A G T C A G T C G T A C
p-value:1e-7
log p-value:-1.820e+01
Information Content per bp:1.936
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif66.2
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets80.2 +/- 59.5bp
Average Position of motif in Background108.9 +/- 52.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GGGCAGTAAA-
-KGCCATAAAA
 A C T G A C T G A C T G A T G C C G T A A C T G A C G T C G T A G T C A C G T A A C G T
A C G T C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GGGCAGTAAA---
-NGYCATAAAWCH
 A C T G A C T G A C T G A T G C C G T A A C T G A C G T C G T A G T C A C G T A A C G T A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0013.1_Cdx2/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GGGCAGTAAA----
AAAGGTAATAAAATTT
 A C G T A C G T A C T G A C T G A C T G A T G C C G T A A C T G A C G T C G T A G T C A C G T A A C G T A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GGGCAGTAAA-
-VGCCATAAAA
 A C T G A C T G A C T G A T G C C G T A A C T G A C G T C G T A G T C A C G T A A C G T
A C G T T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GGGCAGTAAA
TNNGGGCAG----
 A C G T A C G T A C G T A C T G A C T G A C T G A T G C C G T A A C T G A C G T C G T A G T C A C G T A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GGGCAGTAAA-
-GGCMATGAAA
 A C T G A C T G A C T G A T G C C G T A A C T G A C G T C G T A G T C A C G T A A C G T
A C G T C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A

PH0012.1_Cdx1/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GGGCAGTAAA----
TAAGGTAATAAAATTA
 A C G T A C G T A C T G A C T G A C T G A T G C C G T A A C T G A C G T C G T A G T C A C G T A A C G T A C G T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GGGCAGTAAA-
-NGCAATTAAA
 A C T G A C T G A C T G A T G C C G T A A C T G A C G T C G T A G T C A C G T A A C G T
A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

HOXA10/MA0899.1/Jaspar

Match Rank:9
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GGGCAGTAAA--
-GGTAATAAAAA
 A C T G A C T G A C T G A T G C C G T A A C T G A C G T C G T A G T C A C G T A A C G T A C G T
A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GGGCAGTAAA-
-RGCAATNAAA
 A C T G A C T G A C T G A T G C C G T A A C T G A C G T C G T A G T C A C G T A A C G T
A C G T C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A