Information for 15-CCGTGCTG (Motif 20)

G T A C A G T C A C T G A C G T A C T G A T G C A C G T C T A G
Reverse Opposite:
G A T C G T C A A T C G A G T C C G T A A G T C C T A G A C T G
p-value:1e-5
log p-value:-1.272e+01
Information Content per bp:1.811
Number of Target Sequences with motif159.0
Percentage of Target Sequences with motif11.63%
Number of Background Sequences with motif3889.6
Percentage of Background Sequences with motif8.07%
Average Position of motif in Targets93.2 +/- 52.8bp
Average Position of motif in Background102.1 +/- 64.8bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CCGTGCTG
GGACGTGC--
 A C G T A C G T G T A C A G T C A C T G A C G T A C T G A T G C A C G T C T A G
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:2
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CCGTGCTG
RTACGTGC--
 A C G T A C G T G T A C A G T C A C T G A C G T A C T G A T G C A C G T C T A G
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T

HIF1A/MA1106.1/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CCGTGCTG
GTACGTGCCC
 A C G T A C G T G T A C A G T C A C T G A C G T A C T G A T G C A C G T C T A G
T A C G A G C T C G T A A G T C C T A G A G C T T C A G G T A C A T G C A T G C

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:4
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----CCGTGCTG
GGGTACGTGC--
 A C G T A C G T A C G T A C G T G T A C A G T C A C T G A C G T A C T G A T G C A C G T C T A G
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CCGTGCTG
NNCGCGTGNN-
 A C G T A C G T A C G T G T A C A G T C A C T G A C G T A C T G A T G C A C G T C T A G
C A T G C T G A T G A C C T A G A G T C T C A G G A C T C T A G A T G C A T G C A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CCGTGCTG
TACGTGCV-
 A C G T G T A C A G T C A C T G A C G T A C T G A T G C A C G T C T A G
A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T

MAX/MA0058.3/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CCGTGCTG
NNCACGTGGT-
 A C G T A C G T A C G T G T A C A G T C A C T G A C G T A C T G A T G C A C G T C T A G
C T G A T A C G T G A C C T G A A G T C T C A G G A C T A C T G A C T G A C G T A C G T

MNT/MA0825.1/Jaspar

Match Rank:8
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CCGTGCTG
NGCACGTGNT-
 A C G T A C G T A C G T G T A C A G T C A C T G A C G T A C T G A T G C A C G T C T A G
C T A G A C T G G T A C G T C A A G T C T C A G C G A T C A T G A T C G G A C T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CCGTGCTG--
CCCCCTGCTGTG
 A C G T A C G T G T A C A G T C A C T G A C G T A C T G A T G C A C G T C T A G A C G T A C G T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Arnt/MA0004.1/Jaspar

Match Rank:10
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCGTGCTG
CACGTG---
 A C G T G T A C A G T C A C T G A C G T A C T G A T G C A C G T C T A G
G T A C C T G A A G T C A C T G A C G T A C T G A C G T A C G T A C G T