Information for 10-GCCAAGGAAA (Motif 9)

C A T G A T G C T A G C G C T A G T C A C A T G C A T G T C G A C T G A G C T A
Reverse Opposite:
C G A T G A C T A G C T G T A C G T A C C A G T C G A T A T C G T A C G G T A C
p-value:1e-13
log p-value:-3.143e+01
Information Content per bp:1.647
Number of Target Sequences with motif160.0
Percentage of Target Sequences with motif11.70%
Number of Background Sequences with motif2986.4
Percentage of Background Sequences with motif6.20%
Average Position of motif in Targets97.4 +/- 59.4bp
Average Position of motif in Background100.7 +/- 60.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.2/Jaspar

Match Rank:1
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---GCCAAGGAAA
NNTGCCAAGNN--
 A C G T A C G T A C G T C A T G A T G C T A G C G C T A G T C A C A T G C A T G T C G A C T G A G C T A
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GCCAAGGAAA
CGTGCCAAG----
 A C G T A C G T A C G T C A T G A T G C T A G C G C T A G T C A C A T G C A T G T C G A C T G A G C T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GCCAAGGAAA-----
TGCCAAAATAAACANN
 A C G T C A T G A T G C T A G C G C T A G T C A C A T G C A T G T C G A C T G A G C T A A C G T A C G T A C G T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCCAAGGAAA
NGTTGCCATGGCAA
 A C G T A C G T A C G T A C G T C A T G A T G C T A G C G C T A G T C A C A T G C A T G T C G A C T G A G C T A
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:5
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GCCAAGGAAA--
--CAAGGHCANV
 C A T G A T G C T A G C G C T A G T C A C A T G C A T G T C G A C T G A G C T A A C G T A C G T
A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCCAAGGAAA--
TTGCCATGGCAACC
 A C G T A C G T C A T G A T G C T A G C G C T A G T C A C A T G C A T G T C G A C T G A G C T A A C G T A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCCAAGGAAA
GGCMATGAAA
 C A T G A T G C T A G C G C T A G T C A C A T G C A T G T C G A C T G A G C T A
C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GCCAAGGAAA
GGTGCCAAGT---
 A C G T A C G T A C G T C A T G A T G C T A G C G C T A G T C A C A T G C A T G T C G A C T G A G C T A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCCAAGGAAA
BTCAAGGTCA
 C A T G A T G C T A G C G C T A G T C A C A T G C A T G T C G A C T G A G C T A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GCCAAGGAAA
ACTAGCCAATCA--
 A C G T A C G T A C G T A C G T C A T G A T G C T A G C G C T A G T C A C A T G C A T G T C G A C T G A G C T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T