Information for 15-CTTGTAAAAGCA (Motif 17)

A G T C A C G T C G A T A C T G C G A T C G T A C G T A C G T A C G T A C T A G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C A C G T A C G T A C G T A C G T G C T A G T A C C G T A C G T A C T A G
p-value:1e-10
log p-value:-2.340e+01
Information Content per bp:1.873
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif9.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets106.4 +/- 53.5bp
Average Position of motif in Background139.9 +/- 50.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-CTTGTAAAAGCA
GCTCGTAAAAA--
 A C G T A G T C A C G T C G A T A C T G C G A T C G T A C G T A C G T A C G T A C T A G A G T C C G T A
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----CTTGTAAAAGCA
AAACCTCGTAAAATTT
 A C G T A C G T A C G T A C G T A G T C A C G T C G A T A C T G C G A T C G T A C G T A C G T A C G T A C T A G A G T C C G T A
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CTTGTAAAAGCA
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T A C G T A G T C A C G T C G A T A C T G C G A T C G T A C G T A C G T A C G T A C T A G A G T C C G T A
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTTGTAAAAGCA
CYHATAAAAN--
 A G T C A C G T C G A T A C T G C G A T C G T A C G T A C G T A C G T A C T A G A G T C C G T A
T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTTGTAAAAGCA
CCYMATAAAA---
 A C G T A G T C A C G T C G A T A C T G C G A T C G T A C G T A C G T A C G T A C T A G A G T C C G T A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTTGTAAAAGCA
NCYAATAAAA---
 A C G T A G T C A C G T C G A T A C T G C G A T C G T A C G T A C G T A C G T A C T A G A G T C C G T A
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CTTGTAAAAGCA
--TGGAAAA---
 A G T C A C G T C G A T A C T G C G A T C G T A C G T A C G T A C G T A C T A G A G T C C G T A
A C G T A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTTGTAAAAGCA
GTCGTAAAAA--
 A G T C A C G T C G A T A C T G C G A T C G T A C G T A C G T A C G T A C T A G A G T C C G T A
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T A C G T

HOXC12/MA0906.1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTTGTAAAAGCA
GGTCGTAAAAA--
 A C G T A G T C A C G T C G A T A C T G C G A T C G T A C G T A C G T A C G T A C T A G A G T C C G T A
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTTGTAAAAGCA
GNCTATAAAAGG-
 A C G T A G T C A C G T C G A T A C T G C G A T C G T A C G T A C G T A C G T A C T A G A G T C C G T A
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T