Information for 17-TGCCAAAAKA (Motif 19)

A C G T A C T G T G A C G T A C C G T A T G C A C T G A G T C A C A G T C T G A
Reverse Opposite:
G A C T G T C A A C G T A G C T A C G T A C G T A C T G A C T G T G A C C G T A
p-value:1e-9
log p-value:-2.233e+01
Information Content per bp:1.758
Number of Target Sequences with motif53.0
Percentage of Target Sequences with motif3.16%
Number of Background Sequences with motif550.1
Percentage of Background Sequences with motif1.16%
Average Position of motif in Targets83.6 +/- 48.4bp
Average Position of motif in Background97.1 +/- 60.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--TGCCAAAAKA
GGTGCCAAGT--
 A C G T A C G T A C G T A C T G T G A C G T A C C G T A T G C A C T G A G T C A C A G T C T G A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TGCCAAAAKA
TTGCCAAG---
 A C G T A C G T A C T G T G A C G T A C C G T A T G C A C T G A G T C A C A G T C T G A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--TGCCAAAAKA
CGTGCCAAG---
 A C G T A C G T A C G T A C T G T G A C G T A C C G T A T G C A C T G A G T C A C A G T C T G A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:4
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--TGCCAAAAKA
NNTGCCAAGNN-
 A C G T A C G T A C G T A C T G T G A C G T A C C G T A T G C A C T G A G T C A C A G T C T G A
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TGCCAAAAKA------
TGCCAAAATAAACANN
 A C G T A C T G T G A C G T A C C G T A T G C A C T G A G T C A C A G T C T G A A C G T A C G T A C G T A C G T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

PB0145.1_Mafb_2/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TGCCAAAAKA--
CAATTGCAAAAATAT
 A C G T A C G T A C G T A C G T A C T G T G A C G T A C C G T A T G C A C T G A G T C A C A G T C T G A A C G T A C G T
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGCCAAAAKA
ATGCCAACC--
 A C G T A C G T A C T G T G A C G T A C C G T A T G C A C T G A G T C A C A G T C T G A
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TGCCAAAAKA-----
AACACCAAAACAAAGGA
 A C G T A C G T A C G T A C T G T G A C G T A C C G T A T G C A C T G A G T C A C A G T C T G A A C G T A C G T A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TGCCAAAAKA
RHTGWCAR----
 A C G T A C G T A C G T A C T G T G A C G T A C C G T A T G C A C T G A G T C A C A G T C T G A
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T

ZNF384/MA1125.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TGCCAAAAKA--
TTTAAAAAAAAA
 A C G T A C T G T G A C G T A C C G T A T G C A C T G A G T C A C A G T C T G A A C G T A C G T
C G A T G C A T C G A T G T C A C G T A G C T A C G T A C G T A G C T A G C T A G C T A G C T A