Information for 17-TGCTATGCAAAG (Motif 25)

C G A T A C T G A G T C G A C T C G T A A C G T A C T G A G T C C G T A C G T A C G T A C T A G
Reverse Opposite:
A G T C C G A T A C G T C G A T C T A G A G T C C G T A C G A T C G T A A C T G A G T C C G T A
p-value:1e-6
log p-value:-1.549e+01
Information Content per bp:1.835
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif38.9
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets64.3 +/- 52.5bp
Average Position of motif in Background111.4 +/- 52.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer

Match Rank:1
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:TGCTATGCAAAG-
---TATGCAAATC
 C G A T A C T G A G T C G A C T C G T A A C G T A C T G A G T C C G T A C G T A C G T A C T A G A C G T
A C G T A C G T A C G T G A C T C G T A C A G T A C T G A G T C C G T A C G T A C G T A C A G T T G A C

POU5F1B/MA0792.1/Jaspar

Match Rank:2
Score:0.70
Offset:3
Orientation:forward strand
Alignment:TGCTATGCAAAG
---TATGCAAAT
 C G A T A C T G A G T C G A C T C G T A A C G T A C T G A G T C C G T A C G T A C G T A C T A G
A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

POU5F1/MA1115.1/Jaspar

Match Rank:3
Score:0.70
Offset:2
Orientation:forward strand
Alignment:TGCTATGCAAAG-
--ATATGCAAATT
 C G A T A C T G A G T C G A C T C G T A A C G T A C T G A G T C C G T A C G T A C G T A C T A G A C G T
A C G T A C G T C G T A G C A T T C G A G A C T C T A G A G T C G C T A C T G A G C T A G C A T C A G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.70
Offset:3
Orientation:forward strand
Alignment:TGCTATGCAAAG---
---TATGCWAATBAV
 C G A T A C T G A G T C G A C T C G T A A C G T A C T G A G T C C G T A C G T A C G T A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

POU3F4/MA0789.1/Jaspar

Match Rank:5
Score:0.70
Offset:3
Orientation:forward strand
Alignment:TGCTATGCAAAG
---TATGCAAAT
 C G A T A C T G A G T C G A C T C G T A A C G T A C T G A G T C C G T A C G T A C G T A C T A G
A C G T A C G T A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TGCTATGCAAAG
CATTGTTATGCAAAT
 A C G T A C G T A C G T C G A T A C T G A G T C G A C T C G T A A C G T A C T G A G T C C G T A C G T A C G T A C T A G
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:7
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TGCTATGCAAAG
CTTTGTTATGCAAAT
 A C G T A C G T A C G T C G A T A C T G A G T C G A C T C G T A A C G T A C T G A G T C C G T A C G T A C G T A C T A G
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:TGCTATGCAAAG
--TTATGCAAAT
 C G A T A C T G A G T C G A C T C G T A A C G T A C T G A G T C C G T A C G T A C G T A C T A G
A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.67
Offset:2
Orientation:forward strand
Alignment:TGCTATGCAAAG
--ATATGCAAAT
 C G A T A C T G A G T C G A C T C G T A A C G T A C T G A G T C C G T A C G T A C G T A C T A G
A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

Pou2f3/MA0627.1/Jaspar

Match Rank:10
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TGCTATGCAAAG----
TTGTATGCAAATTAGA
 C G A T A C T G A G T C G A C T C G T A A C G T A C T G A G T C C G T A C G T A C G T A C T A G A C G T A C G T A C G T A C G T
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A