Information for 8-CAAATAAAATGT (Motif 8)

A G T C C G T A C G T A C G T A A C G T T C G A C G T A G T C A C G T A A C G T A C T G C G A T
Reverse Opposite:
C G T A A G T C C G T A A C G T A C G T A C G T A G C T C G T A C G A T A C G T A C G T C T A G
p-value:1e-13
log p-value:-3.217e+01
Information Content per bp:1.897
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif14.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets120.2 +/- 46.3bp
Average Position of motif in Background113.3 +/- 53.4bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0057.1_Hoxb13/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CAAATAAAATGT-
AACCCAATAAAATTCG
 A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C G T T C G A C G T A G T C A C G T A A C G T A C T G C G A T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

PB0093.1_Zfp105_1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CAAATAAAATGT-
AACAAACAACAAGAG
 A C G T A C G T A G T C C G T A C G T A C G T A A C G T T C G A C G T A G T C A C G T A A C G T A C T G C G A T A C G T
G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G

PH0086.1_Irx5/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CAAATAAAATGT------
-AATATACATGTAAAATT
 A G T C C G T A C G T A C G T A A C G T T C G A C G T A G T C A C G T A A C G T A C T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T

PH0084.1_Irx3_2/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CAAATAAAATGT-----
NNTATTACATGTANNNT
 A G T C C G T A C G T A C G T A A C G T T C G A C G T A G T C A C G T A A C G T A C T G C G A T A C G T A C G T A C G T A C G T A C G T
G C A T C T G A G C A T G C T A A C G T C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A C G A T G C T A G C A T G C A T

HOXD13/MA0909.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAAATAAAATGT
CCAATAAAAA--
 A G T C C G T A C G T A C G T A A C G T T C G A C G T A G T C A C G T A A C G T A C T G C G A T
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CAAATAAAATGT--
AATGCAATAAAATTTAT
 A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C G T T C G A C G T A G T C A C G T A A C G T A C T G C G A T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

HOXB13/MA0901.1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CAAATAAAATGT
CCAATAAAAC--
 A G T C C G T A C G T A C G T A A C G T T C G A C G T A G T C A C G T A A C G T A C T G C G A T
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CAAATAAAATGT
NCYAATAAAA---
 A C G T A G T C C G T A C G T A C G T A A C G T T C G A C G T A G T C A C G T A A C G T A C T G C G A T
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CAAATAAAATGT-
CTACCAATAAAATTCT
 A C G T A C G T A C G T A G T C C G T A C G T A C G T A A C G T T C G A C G T A G T C A C G T A A C G T A C T G C G A T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

PH0085.1_Irx4/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CAAATAAAATGT------
-AATATACATGTAAAACA
 A G T C C G T A C G T A C G T A A C G T T C G A C G T A G T C A C G T A A C G T A C T G C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A